Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0176 ATGTCCCAACTCAAGGAACATGTTCGTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGAACAGTCCTTGATCGTGCTGAAAGGGCAAGCGAACAGTCAAGGAAATTCCCAATCAGGAACACAGTACTTCGCAAAGGCTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGAGTCCTGAATCTCAGGCCAACGCTACCGTTTTTCTCGCCAAGTTTTACGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCTGAGCATCTTCGCCCTGCGATCTTTAGATCTCTTCTCTATGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCTGTTGAGGCCGTGCTTAAAGGCGCTCCGATCACGCCGATTAACTCGGAAGCGGCGGCGACTGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCACGTTTCCAAGGATGAAAACTCTGCCGCTTCCAACGACGGTGGAGCGAACCGGCGAGTCAAGACTCGGTGTCGCTTCAAGCGCTCGGCTGTGAAGGCGAAAGCGAGTAAAGGAATCACCTCCGCTGTCGTTGAGTCGACTCGGCGACTATGCTCCTCCACCGAGTTGAACCGGTCTTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCCGATTCGCCGCATCTCGAGCATGAGAGCAAAGAGACCGAGAGTATGATCTCGGTGGAGACGGCGGAGGTTTCTCCTCCTCCGCCGCCGTCGGATTTGTTCCGATCGGAGTCCAGTTCCGTACAGAAATCCACCGGGCACGGCGGCGCGATGGCAATTCCGGAAAGTGAGTTAGCTCTAGAACTAACCCTGGGAATGGAGCCGGTGTCACGTGCCCAGCACGTAATTCCAATGAAGAAGCGAAAGATAGAGGCCGACTTCAGGCCCAATAACGAAGCGTGCAATACAATATTGGGCCTGGATTTTGCAGCCTGA 1038 54.62 MSQLKEHVRALVLKGVAATQVQGTCPNSRTVLDRAERASEQSRKFPIRNTVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGANRRVKTRCRFKRSAVKAKASKGITSAVVESTRRLCSSTELNRSSSGESSLSHQSDSPHLEHESKETESMISVETAEVSPPPPPSDLFRSESSSVQKSTGHGGAMAIPESELALELTLGMEPVSRAQHVIPMKKRKIEADFRPNNEACNTILGLDFAA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1645405 1647683 + Lag0030814.1 Lac11g0176 586034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0176 345 MobiDBLite consensus disorder prediction 226 241 - -
Lac11g0176 345 Pfam Lateral organ boundaries (LOB) domain 51 143 IPR004883 -
Lac11g0176 345 MobiDBLite consensus disorder prediction 226 290 - -
Lac11g0176 345 MobiDBLite consensus disorder prediction 242 257 - -
Lac11g0176 345 PIRSF AS2 50 341 IPR017414 -
Lac11g0176 345 ProSiteProfiles LOB domain profile. 44 150 IPR004883 -
Lac11g0176 345 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 51 308 - GO:0010468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0176 Lac-Chr11:1645405 Lac13g0499 Lac-Chr13:3647499 3.40E-48 dispersed
Lac11g0176 Lac-Chr11:1645405 Lac3g0479 Lac-Chr3:3652801 2.50E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22881 PF03195 LOB 2.80E-20 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0176 - - - 0.0