Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0184 ATGCCGGAAGAAACCATTCGGATAGATGACGTCATGGAAGCCGCTTCCGGTCCTCATTTCTCTGGCCTCCGACTCGACGGACTTCTCTCCTCTCCCCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGTTTTTCTCTTTCCGCCTCCTCTGCGCAGGCCGATGCCAACTCTCCCAAGCAGCCATTCGTAATCGGTGTTTCTGGAGGTACTGCTTCTGGGAAGACGACGGTGTGTGATATGATTATCCAGCAACTGCATGATCATAGGGTTGTGTTGGTCAATCAGGACTCGTTTTACCGTGGATTGACAGCTGAGGAACTAGAACGTGTGCACGAGTATAATTTTGATCATCCTGATTCGTTCGACACGGAGCAGCTTGTGGATTGCATTGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGCTTTCGCCAGGTAAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTTCGCAATCTGATGAACATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTCGCTCGTAGAATTAGACGTGATACAGTAGAAAGAGGCAGGGACATTAACTCCGTTCTTGAACAGTATGCAAAGTTCGTAAAACCTGCTTTTGATGATTTCGTTCTGCCATCAAAGAAGTATGCTGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATTCGTACAAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACAGTCATTCAGTCAACATTTCAGATACGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTGTTCTATTCAGATCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACAGCATCTGTATACACTGGGGTTGATTTCTGCAAGAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGTATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGCGAGGGAGATAATGGACAGCAGCTGATATACGAGAAATTACCCAATGATATATCAGAGCGACATGTCCTCCTCCTAGATCCTGTTCTCGCAACTGGCAACTCAGCTAACCAAGCAATTGATCTACTCATACAGAAGGGAGTTCCAGAATCGCACATCATATTTCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGCTGGATTGAACGAAGAGTATCGTGTCATACCTGTTTTGAGTTTTGAGGGTTTGTCTAGGGTCGTTAAACCGGGGCCCAAGCTGGTCGGGCCCAAAACCGAAAGGAATCAAACCAACGAAGCGAAGGGCCGAAACTCTTTCCGGCCCACGAAGACCACGCTCGGCCTCGGCCCATTGCCGAGGCCGACCAGGGCCAAAGGCCCGATGGAGGCTAGGAGTCCCCCGGTAGCAGAAACCCTAGAGGGAGCTTATAAAAAGGGAGACCGCCGGCGCATTCAGGTCACGTCCTTCCCGCTTCCTTACAAATTCACCGTTGATCGTCGTGTGGAGCGAGGGGCAAATCCCTAA 1719 47.0 MPEETIRIDDVMEAASGPHFSGLRLDGLLSSPPSSSTSSPAHRFSLSASSAQADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAGLNEEYRVIPVLSFEGLSRVVKPGPKLVGPKTERNQTNEAKGRNSFRPTKTTLGLGPLPRPTRAKGPMEARSPPVAETLEGAYKKGDRRRIQVTSFPLPYKFTVDRRVERGANP 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1724161 1733558 - Lag0030822.1 Lac11g0184 586042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0184 572 MobiDBLite consensus disorder prediction 28 57 - -
Lac11g0184 572 PRINTS Uridine kinase signature 91 102 - -
Lac11g0184 572 PRINTS Uridine kinase signature 193 203 - -
Lac11g0184 572 PRINTS Uridine kinase signature 229 242 - -
Lac11g0184 572 PRINTS Uridine kinase signature 136 151 - -
Lac11g0184 572 PRINTS Uridine kinase signature 207 218 - -
Lac11g0184 572 PRINTS Uridine kinase signature 61 78 - -
Lac11g0184 572 NCBIfam uridine kinase 60 261 IPR000764 -
Lac11g0184 572 Gene3D - 57 264 IPR027417 -
Lac11g0184 572 FunFam Uridine kinase 58 264 - -
Lac11g0184 572 CDD UMPK 63 261 IPR000764 -
Lac11g0184 572 MobiDBLite consensus disorder prediction 483 534 - -
Lac11g0184 572 MobiDBLite consensus disorder prediction 489 509 - -
Lac11g0184 572 FunFam Uridine kinase 265 476 - -
Lac11g0184 572 MobiDBLite consensus disorder prediction 25 58 - -
Lac11g0184 572 PANTHER URIDINE KINASE 56 419 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Lac11g0184 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Lac11g0184 572 Gene3D - 265 473 IPR029057 -
Lac11g0184 572 SUPERFAMILY PRTase-like 264 471 IPR029057 -
Lac11g0184 572 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Lac11g0184 572 Pfam Uracil phosphoribosyltransferase 279 468 - -
Lac11g0184 572 CDD PRTases_typeI 338 453 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0184 K00876 - - csv:101207261 856.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0184 Lac-Chr11:1724161 Lac2g1551 Lac-Chr2:13492051 4.80E-201 dispersed
Lac11g0184 Lac-Chr11:1724161 Lac6g3072 Lac-Chr6:48292454 2.50E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac9g1758 . 77 557 PRT Gene Family AT2G16570 84.9 4.7e-241 831.2
Lac9g1758 . 77 557 PRT Gene Family AT4G34740 85.3 1.6e-241 832.8
Lac9g1758 . 56 530 PRT Gene Family AT4G38880 72.3 6.7e-197 684.5
Lac6g0253 . 73 252 PRT Gene Family AT1G27450 79.8 2.0e-76 282.7
Lac11g2260 . 7 180 PRT Gene Family AT1G27450 74.7 4.0e-72 268.5
Lac6g0626 . 11 168 PRT Gene Family AT1G27450 73.4 5.2e-64 241.5
Lac5g0451 . 3 145 PRT Gene Family AT1G27450 74.3 1.8e-56 216.5
Lac11g2260 . 30 180 PRT Gene Family AT1G80050 77.5 8.6e-63 237.3
Lac6g0626 . 33 168 PRT Gene Family AT1G80050 80.9 1.2e-56 216.9
Lac6g0253 . 102 248 PRT Gene Family AT1G80050 66.0 4.9e-50 194.9
Lac5g0451 . 30 145 PRT Gene Family AT1G80050 75.0 2.8e-45 179.1
Lac11g2260 . 6 104 PRT Gene Family AT4G22570 80.8 1.3e-43 172.9
Lac5g0451 . 1 104 PRT Gene Family AT4G22570 77.1 1.2e-41 166.4
Lac6g0626 . 11 100 PRT Gene Family AT4G22570 78.9 3.1e-37 151.8
Lac11g2260 . 1 96 PRT Gene Family AT4G12440 82.3 2.8e-40 161.8
Lac5g0451 . 1 96 PRT Gene Family AT4G12440 80.2 2.0e-38 155.6
Lac6g0626 . 4 99 PRT Gene Family AT4G12440 78.1 4.9e-37 151.0
Lac6g0626 . 1 148 PRT Gene Family AT5G11160 81.1 6.2e-64 241.1
Lac11g2260 . 8 145 PRT Gene Family AT5G11160 75.4 3.1e-55 212.2
Lac5g0451 . 8 151 PRT Gene Family AT5G11160 70.8 2.2e-53 206.1
Lac6g0253 . 80 214 PRT Gene Family AT5G11160 70.3 1.5e-49 193.4
Lac8g2223 . 1 186 PRT Gene Family AT1G71750 66.5 6.9e-70 261.2
Lac2g1551 . 63 516 PRT Gene Family AT1G55810 85.7 2.0e-226 782.3
Lac11g0184 . 19 468 PRT Gene Family AT1G55810 73.8 1.9e-192 669.5
Lac2g1551 . 113 515 PRT Gene Family AT3G27440 77.2 6.1e-185 644.4
Lac11g0184 . 80 470 PRT Gene Family AT3G27440 75.7 6.3e-174 607.8
Lac11g0184 . 1 470 PRT Gene Family AT3G27190 86.2 9.3e-238 820.1
Lac2g1551 . 50 515 PRT Gene Family AT3G27190 74.4 4.1e-209 724.9
Lac1g1971 . 14 291 PRT Gene Family AT3G53900 68.7 2.8e-107 386.0
Lac2g1551 . 48 516 PRT Gene Family AT4G26510 84.8 1.6e-234 809.3
Lac11g0184 . 10 468 PRT Gene Family AT4G26510 75.4 3.8e-204 708.4
Lac11g0184 . 1 470 PRT Gene Family AT5G40870 86.2 3.6e-237 818.1
Lac2g1551 . 50 518 PRT Gene Family AT5G40870 73.2 3.5e-208 721.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61