Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0204 ATGAAGCGAGAACACCCTCACAGATCCCCAGGTTCCGCCGCCGGCAAGGCCAAGATGTGGGCGGCGGAGGAGGACGACGACGACAAGCATCTAGCCGCTCTCGGCTACAATGTCCGGTCGTCGGACATGGCCGACGTCGCTCTGAAGCTCGAACAGCTCGAAATGGTGATGGGTCTGTCGGAAGAAGACGGAATTTCTCACCTCTCTTCGAACACCGTCCATTACAATCCCTCCGATGTGTCTTCCTGGGTTCAAAGCATGCTCGCTGAACTCAACAGCCCCCTTCAATCCCAACGAATCGACGACCCTATTCTCGCCATAGCCGAATCGACTTCCTCCTCCGTCGCCGCCTTCGCCGACGACTCCGAGTACGATCTCCGAGCGATTCCGGGCGTCGCTGCTTACCCCCAGATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCCGAGTCCGAATCGCTTCTTTTTCCTGCTTCTTCTTCTTCTTCTTCTTCGTCGTCGGAGCCGTCGCGCACGGTGGTTCTGGTGGACTCCGCCGAGACCGGCGTCCGTCTTGTCCACAGTCTCCTCGCCTGCGCCGACGCCGTCGACACCAACAACCTCAACCTCGCCGACGCGTTGCTGAAACACATCAGAATCCTCGTCGAGGCCCAAGCCGGCGCTATGAGGAAAGTCGCCGGTTATTTCGCCGAAGCTCTCACTCGCCGGATTTACAGAATCCACCCACCGGAGACATTTGATTCATCTTCCTACACCGATCTCCTCCAAATGCATTTCTACGAATCTTGCCCGTATTTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTCGAATCTGTTGGCGCCGCCGCAACCGTCCACGTCGTCGATTTCAACCTCCAGCAGGGCCTCCAATGGCCGGCGTTGATACAAGCCCTGGCCCTCCGGCCAGGTGGGCCGCCGGCGTTTCATCTCACCGGAATCGGCCAAAATTCCTGCGACGGATTGCAGGAAGTGGGTTCGAAATTGGCCCAATTCGCGGATAACATCGGCGTGAAATTCGAATTCCGTGGCTACCTCTGCAACAATTTAGCCGATCTGGACCCGTCGGTGCTCAATTTAGAATCGGAAACCGTCGCCATAAACTCCATTTTCGAGCTCCACCGGCAACTGGCCCATCCGGGCGCGATCGAGAAAGTTCTCACCACGATCAAAGAACTCAACCCGAAGATCGTCACCGTCGTGGAACAGGTCGCCGACCTGAACGGACCATCCTTCGTCGAGCGGTTCACGGAAGCGTTACACTGTTACTCGAGCTTGTTCGATTCGTTGGAAGGGTCGCCGGCGGGAGAGGAGGATGTGGCGAGGTCGGAGGAGTATCTGGGGAGGCAAATCTGCAACGTGGTGGCGTGTGAAGGTTCCGACCGGGTGGAGCGGCACGAGACGGTGGCGCAGTGGCGGAGCCGGATGGGCTCCGGTGGGTTCGAGATGGTTCATCTGGGATCGAACGCGTTCAAGCAGGCGAGTACTTTGCTGGCTCTGTTCGGCGGCGGAAACGGGTACAGAGTCGAAGAGAACAATGGGAGTTTGACGTTGGGTTGGCACACTCGGCCGCTCATCGCCACCTCGGCATGGGCGGTGGCCGCCGGTAACGGCGGCGAGTCGACTCGGCCGAGTTAA 1665 58.14 MKREHPHRSPGSAAGKAKMWAAEEDDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNSPLQSQRIDDPILAIAESTSSSVAAFADDSEYDLRAIPGVAAYPQIDSTNPRKRFKKSESESLLFPASSSSSSSSSEPSRTVVLVDSAETGVRLVHSLLACADAVDTNNLNLADALLKHIRILVEAQAGAMRKVAGYFAEALTRRIYRIHPPETFDSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGAAATVHVVDFNLQQGLQWPALIQALALRPGGPPAFHLTGIGQNSCDGLQEVGSKLAQFADNIGVKFEFRGYLCNNLADLDPSVLNLESETVAINSIFELHRQLAHPGAIEKVLTTIKELNPKIVTVVEQVADLNGPSFVERFTEALHCYSSLFDSLEGSPAGEEDVARSEEYLGRQICNVVACEGSDRVERHETVAQWRSRMGSGGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWAVAAGNGGESTRPS 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1964965 1966629 - Lag0030842.1 Lac11g0204 586062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0204 554 Gene3D - 27 91 IPR038088 -
Lac11g0204 554 Pfam GRAS domain family 186 540 IPR005202 -
Lac11g0204 554 Pfam Transcriptional regulator DELLA protein N terminal 28 94 IPR021914 -
Lac11g0204 554 MobiDBLite consensus disorder prediction 1 22 - -
Lac11g0204 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 163 540 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Lac11g0204 554 FunFam DELLA protein GAI 26 91 - -
Lac11g0204 554 ProSiteProfiles GRAS family profile. 177 541 IPR005202 -
Lac11g0204 554 SMART DELLA_2 28 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2416 Lac-Chr10:37266512 Lac11g0204 Lac-Chr11:1964965 7.60E-22 dispersed
Lac11g0204 Lac-Chr11:1964965 Lac8g1624 Lac-Chr8:34235615 4.40E-175 dispersed
Lac11g0204 Lac-Chr11:1964965 Lac3g0856 Lac-Chr3:6861724 1.40E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22884 PF03514 GRAS 1.50E-123 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0204 K14494 - csv:101203095 872.463