Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0217 ATGGGTGGCCGGCCCAGATTGGAATGGAATCTCTCCGATGATTCTCCCTGTTCTTGGGCTGGTGTTAACTGTGACCGGAATCGGGTTTTTGAGCTTCGGCTTCCGGCAATGGGGCTTTCCGGTGAGCTTCCGGTGGGGCTTGGGAATTTGACGCAGTTGCAAACTCTGTCTCTGCGGTTTAATGCTCTGTCCGGTCAGATTCCGGCGGATTTTGCGAATCTTCGAGGGCTGAGGAATCTTTACTTGCAGGGGAACTCGTTTTCCGGCGAGATTCCGGCGTTTCTGTTCGATTTGCAGAACTTGGTCCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTCCATCGGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACTGGAATTGTTCCTGATTTGAATCTCCCTCTTGCCCAATTTAATGTCTCGTTTAATCAATTGAATGGTTCGATTCCCTCGAAGCTCTCTGGCTTTCCGGCCAGTGCTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGCTGCTCTGCAACTCGACCGCCCCCGAGCCCGGTCGAAAGTCGAAGCTCTCCGGCGCGGCGATTGCCGGAATTGTGATTGGTGGTTTGTTTTTGTTGGTGTTGATTTTGGTTGTTCTGATTCTTGTCTGTCAAAGAAAGAGTAAATCGGAGTCGAAAGAGGGGGTTCGGCCGAGCGGCGGTCAGGCCGAGGTGTCAGGGGATAAGACGGCAGCGACGGCGGAGAGTAGCGAAAGCATAAATGTAGATCATTTAATGACTGCGCCGAAATCGGCGGCGGGGAAGGGCGGCGAGAAGGATAAGAGATTGGTGTTCTTTGGGAATGTGGGGAATGTGTTTGATTTGGAGGATTTGTTGAGGGCGTCGGCGGAGGTTCTCGGGAAGGGGACGTTCGGGACGGCGTATAAGGCGACGTTGGAGACGGGGATGGTCGTCGCCGTGAAGCGGTTGAAGGAGATGACGGCGGCGGAGAAGGAGTTCAGGGAGAAGATGGAGGAGGTGGGGAGGATGAAGCATGAGAATTTGGTCTCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGAAGTAGAGAGTCAGGAAGGACTCCGTTGAATTGGGAAGCAAGAACTGGCATTGCTCTCGGAGTTGCTCGTGGTATTCATTACCTTCATTCTCAAGGCCCCACCATTTCTCATGGCAACATCAAGTCCTCAAACGTTCTCCTCACTCGATCATACGAAGGTTGTGTATCCGACTTTGGCCTTGCACAACTAGCAATGTCACCCTCAGCTCCAAGTCGTGTCGCTGGGTATCGAGCTCCAGAGGTCACTGATTCTCGAAAGGTATCGCAGAAGGCAGACATCTATAGCTTTGGAGTGTTATTATTGGAGGTGCTAACAGGAAAAGCTCCTACACATTCTATCTTGAACGAGGAAGGTGTTGACCTTCCTAGATGGGTTCAATCGGTGGTTCAAGAGGAATGGACAGCAGAAGTGTTTGATGAAGAACTTCTAAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTGGAACTTGCTTTACAATGCACAGTCCCATATCCCGACAACCGTCCGGAAATGGAGGAGGTCGTCCGACGAATCAAAGAACTCTGTCAATTGACTTCACAAAAACAAAGTGAGACAATTGACAATGATGGAAACAATGGTATTTCCACACAGTTTCATTCAGTAAGCTTAGACGATCCACCATCTACCAGGTAG 1821 49.53 MGGRPRLEWNLSDDSPCSWAGVNCDRNRVFELRLPAMGLSGELPVGLGNLTQLQTLSLRFNALSGQIPADFANLRGLRNLYLQGNSFSGEIPAFLFDLQNLVRLNMADNNFSGEIPSGFNNLSRLATLYLQNNQFTGIVPDLNLPLAQFNVSFNQLNGSIPSKLSGFPASAFEGNLLCGAPLLLCNSTAPEPGRKSKLSGAAIAGIVIGGLFLLVLILVVLILVCQRKSKSESKEGVRPSGGQAEVSGDKTAATAESSESINVDHLMTAPKSAAGKGGEKDKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVSLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARTGIALGVARGIHYLHSQGPTISHGNIKSSNVLLTRSYEGCVSDFGLAQLAMSPSAPSRVAGYRAPEVTDSRKVSQKADIYSFGVLLLEVLTGKAPTHSILNEEGVDLPRWVQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELALQCTVPYPDNRPEMEEVVRRIKELCQLTSQKQSETIDNDGNNGISTQFHSVSLDDPPSTR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2147002 2149277 - Lag0030855.1 Lac11g0217 586075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0217 606 SMART LRR_typ_2 122 145 IPR003591 -
Lac11g0217 606 SMART LRR_typ_2 74 98 IPR003591 -
Lac11g0217 606 SMART LRR_typ_2 50 73 IPR003591 -
Lac11g0217 606 Gene3D Transferase(Phosphotransferase) domain 1 376 594 - -
Lac11g0217 606 Pfam Protein tyrosine and serine/threonine kinase 305 566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0217 606 FunFam pollen receptor-like kinase 1 270 375 - -
Lac11g0217 606 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Lac11g0217 606 Pfam Leucine Rich Repeat 77 97 IPR001611 GO:0005515(InterPro)
Lac11g0217 606 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Lac11g0217 606 Pfam Leucine Rich Repeat 52 74 IPR001611 GO:0005515(InterPro)
Lac11g0217 606 FunFam Probable inactive receptor kinase RLK902 1 143 - -
Lac11g0217 606 SUPERFAMILY Protein kinase-like (PK-like) 305 566 IPR011009 -
Lac11g0217 606 PANTHER OS05G0588300 PROTEIN 5 573 IPR050994 -
Lac11g0217 606 MobiDBLite consensus disorder prediction 577 606 - -
Lac11g0217 606 MobiDBLite consensus disorder prediction 233 259 - -
Lac11g0217 606 FunFam Probable inactive receptor kinase At1g48480 376 579 - -
Lac11g0217 606 ProSiteProfiles Protein kinase domain profile. 301 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0217 606 Gene3D Phosphorylase Kinase; domain 1 276 375 - -
Lac11g0217 606 Pfam Leucine rich repeat N-terminal domain 8 25 IPR013210 -
Lac11g0217 606 Coils Coil 334 354 - -
Lac11g0217 606 CDD STKc_IRAK 307 570 - -
Lac11g0217 606 SUPERFAMILY L domain-like 9 167 - -
Lac11g0217 606 Gene3D Ribonuclease Inhibitor 96 173 IPR032675 -
Lac11g0217 606 Gene3D Ribonuclease Inhibitor 5 95 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0217 Lac-Chr11:2147002 Lac8g1972 Lac-Chr8:38157274 2.30E-129 dispersed
Lac11g0217 Lac-Chr11:2147002 Lac10g0300 Lac-Chr10:2302278 1.10E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85723 PF00069 Pkinase 2.80E-38 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0217 - - - 0.0