Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0229 ATGATCTTGTCATGGAGGAAAAACAAATTAGGGTTTCTCCCCAAGTTGAAGAAAGAGGTTCCGGGCGTCGATTCGGGTTCGGAAATCGTGATTCCTTCGCATTTTTTGTGTCCGATTTCGCTGGATTTGATGAAGGACCCTGTGATTTTGTGCACTGGGATTACTTATGATAGAGAGAGCATCGAGAAGTGGATTGATGGGGGGAAATTTTCTTGTCCTGTGACGAAACAGGATTTGACGACTTTCGACCTAATCCCTAATCACGCGTTGAGGAGGATGATCCAGGATTGGTGCGTTGCGAATCGTTCTTACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTCACGCCGTATGAAGTTAAGGAGGTTTGTTCGAGAATCGCCGTCGCTACTCAAAGGGGCGATTCGAAGAGGTGCGGTGATTTGGTGGGTAAGATGAGGAATTGGGCGAGAGAGAGCGAGAGGAATCGGAGGTGTCTTGTGAATGGAGGAGCCGGCAATGTTTTAGCAGCTTCGTTTGAGCATTTTGCCGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGTGTGTGTGTTCCCAATCGCCATTGAAGGCTTATCTAAGCTCGGGTCTGCGGATTCATTGAAATGTTTGGTTTCCTTCTTAATGGGGAAAGATCTTTCTCCAAAACAAAACGCAGTTTTTGTTCTGAAAGAACTGTTGTTGGCTGATCAAAGATACGTGGCTTCATTGGATGCCATTGAAGGAGTATCTGAAGCTTTAGTTAGCATCATAAGGGAGCCTCTTTGCCCTTCAGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCAGAACACAGCGAGAAAATGGCATTGAAATTTGTGGAACTGGGCTTGGTCTCTCAGCTACTAGATTTTCTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACCAAAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGGTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTTTGTAAGAGTGGAGAGGAGGGTGAGGATGAGGCGAGGGTGGAAGCGGCCCAATTGGGTGCTTTCCAGAAGATATTAGTTCTTTTACAGGTTGGTTGTGGTGGTTACATGAAAGACAAGGTCACCGAGATGTTGAAATTGTTGAATCTGTACAAAGATAGGGTAGATTGTATTGATTCATCCATGCATTTTAAGTACTTGAAGAAATCGTTCTGA 1329 44.24 MILSWRKNKLGFLPKLKKEVPGVDSGSEIVIPSHFLCPISLDLMKDPVILCTGITYDRESIEKWIDGGKFSCPVTKQDLTTFDLIPNHALRRMIQDWCVANRSYGIERIPTPRIPVTPYEVKEVCSRIAVATQRGDSKRCGDLVGKMRNWARESERNRRCLVNGGAGNVLAASFEHFAGVSIEKHVGLLEEILLVLVCVFPIAIEGLSKLGSADSLKCLVSFLMGKDLSPKQNAVFVLKELLLADQRYVASLDAIEGVSEALVSIIREPLCPSATKSSLTAIFYMILPSEHSEKMALKFVELGLVSQLLDFLVDAEKSLCEKALGILDGICDYKQGREKLYQNALTIPLLVKKILRVSEVATEYSLSILLKLCKSGEEGEDEARVEAAQLGAFQKILVLLQVGCGGYMKDKVTEMLKLLNLYKDRVDCIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2256171 2257499 - Lag0030867.1 Lac11g0229 586087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0229 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Lac11g0229 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Lac11g0229 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g0229 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g0229 442 SUPERFAMILY RING/U-box 27 107 - -
Lac11g0229 442 Gene3D - 133 421 IPR011989 -
Lac11g0229 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 108 IPR013083 -
Lac11g0229 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac11g0229 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Lac11g0229 442 SUPERFAMILY ARM repeat 208 419 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0229 Lac-Chr11:2256171 Lac13g1308 Lac-Chr13:12049235 5.90E-122 dispersed
Lac11g0229 Lac-Chr11:2256171 Lac9g2738 Lac-Chr9:45540783 5.80E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0229 - - - 0.0