Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g0239 | ATGGAGAATTTGATGGGTCTTCTGAGAATCCATGTTTCAAGAGGTGTCAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTGTCAAGATGGGCAAACAGAAGTTGAAGACTCGAGTAGTGAAGCAAAATATAAACCCGAAGTGGAACGAAGATCTAACTCTATCGATCCAAGATCCGAATCTTCCGGTCTACCTAATCGTATACGACAAGGACTTGTTCTCACTAGACGACAGGATGGGGGACGCAGAGTTTGACGTTCGTCCATTCATGGAAGCTGTGAAGATGAGGCTGAACAATCTCCCAAGTGGAACAGTCATTAGAAAGATTCAACCAAACAGGGAAAATTGTCTGTCTGAAGAAAGTTGCATTGTTTGGGCAAATGGACAAGTTGTTCAGAAAATGTTTCTTAGGCTAAGAAATGTTGAGTCTGGTGAAGTTGAGCTCGAGTTGAAATGGATCGATATTCCTGGTTCGAGGGGATTGTAG | 498 | 42.17 | MENLMGLLRIHVSRGVNLAVRDVVSSDPYVIVKMGKQKLKTRVVKQNINPKWNEDLTLSIQDPNLPVYLIVYDKDLFSLDDRMGDAEFDVRPFMEAVKMRLNNLPSGTVIRKIQPNRENCLSEESCIVWANGQVVQKMFLRLRNVESGEVELELKWIDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2362220 | 2363462 | + | Lag0030877.1 | Lac11g0239 | 586097 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g0239 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Lac11g0239 | 165 | Pfam | C2 domain | 6 | 93 | IPR000008 | - | |
| Lac11g0239 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 102 | IPR035892 | - | |
| Lac11g0239 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Lac11g0239 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Lac11g0239 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - | |
| Lac11g0239 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0239 | Lac-Chr11:2362220 | Lac3g0420 | Lac-Chr3:3189914 | 9.40E-57 | dispersed | |
| Lac11g0239 | Lac-Chr11:2362220 | Lac10g0291 | Lac-Chr10:2220391 | 1.90E-65 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g0239 | - | - | - | 0.0 |