Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0254 | ATGACGACGAAGATCGACGGAAACGAAGACGAAGAAGTTTCAAAGCTCGAAGAAGGCACTCTCGCTGCCGCTGCCGCCATCCCCTGTCCCTGTCCCTCTCCCTCACCTTTAGTCCTTATCATTCAAAAGGTTATGGCGGAAGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGATCGGTGGTGGTGAACAAAATCTACGGATCGGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGCAATGGTGTATACGGTGGGGCATATCTCTGGAGCGCACTTCAACCCTGCTGTTACCATCACCTTCGCCATTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATTTACATAGTAGCTCAAGTATTGGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGTTTGAAGTGACCCCCGAAAACTTCTTTGGGACAGTGCCTGCTGGATCCAATATCCAATCTTTGGTTATTGAAATCATCATCACATTCCTCTTGTTGTTTGTCATCTCCGGCGTCGGCACTGACAACAGATCTGTAGGAGAATTGGCAGGAATTATTGTCGGAATGACCATTCTCTTAAATGTTTTTGTCGCCGGGCCAATTTCGGGAGCTTCCATGAATCCAGCTAGGAGCATTGGACCAGCGATAGTGAAGCGACAATACAAAGGATTATGGGTTTACATCATAGGACCATTGATTGGAGCAATTGCTGGAGCATTTGTCTATAACCTAATGAGATTCACAGACAAGCCACTGAGTGAGATCACCAGAAGCAGCTCATTCTTCATCGGTAGCCAGAAATCATAA | 822 | 47.32 | MTTKIDGNEDEEVSKLEEGTLAAAAAIPCPCPSPSPLVLIIQKVMAEVIGTYFVIFTGCGSVVVNKIYGSVTFPGICVVWGLIVMAMVYTVGHISGAHFNPAVTITFAIFRRFPFWQVPIYIVAQVLGSLLASCTLDLMFEVTPENFFGTVPAGSNIQSLVIEIIITFLLLFVISGVGTDNRSVGELAGIIVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQYKGLWVYIIGPLIGAIAGAFVYNLMRFTDKPLSEITRSSSFFIGSQKS | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2561332 | 2564902 | + | Lag0030892.1 | Lac11g0254 | 586112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0254 | 273 | Gene3D | Glycerol uptake facilitator protein. | 33 | 261 | IPR023271 | - | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 42 | 61 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 230 | 250 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 193 | 215 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 80 | 104 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 117 | 136 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PRINTS | Major intrinsic protein family signature | 162 | 180 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | Pfam | Major intrinsic protein | 40 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | SUPERFAMILY | Aquaporin-like | 40 | 259 | IPR023271 | - | |
Lac11g0254 | 273 | NCBIfam | MIP family channel protein | 46 | 247 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac11g0254 | 273 | PANTHER | AQUAPORIN NIP2-1 | 38 | 255 | IPR034294 | - | |
Lac11g0254 | 273 | ProSitePatterns | MIP family signature. | 98 | 106 | IPR022357 | - | |
Lac11g0254 | 273 | CDD | MIP | 42 | 250 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0254 | Lac-Chr11:2561332 | Lac1g3444 | Lac-Chr1:53840840 | 5.70E-83 | dispersed | |
Lac11g0254 | Lac-Chr11:2561332 | Lac8g0645 | Lac-Chr8:11004847 | 3.00E-52 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0254 | K09874 | - | csv:101215315 | 439.884 |