Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0254 ATGACGACGAAGATCGACGGAAACGAAGACGAAGAAGTTTCAAAGCTCGAAGAAGGCACTCTCGCTGCCGCTGCCGCCATCCCCTGTCCCTGTCCCTCTCCCTCACCTTTAGTCCTTATCATTCAAAAGGTTATGGCGGAAGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGATCGGTGGTGGTGAACAAAATCTACGGATCGGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGCAATGGTGTATACGGTGGGGCATATCTCTGGAGCGCACTTCAACCCTGCTGTTACCATCACCTTCGCCATTTTTCGTCGCTTCCCCTTCTGGCAGGTTCCAATTTACATAGTAGCTCAAGTATTGGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGTTTGAAGTGACCCCCGAAAACTTCTTTGGGACAGTGCCTGCTGGATCCAATATCCAATCTTTGGTTATTGAAATCATCATCACATTCCTCTTGTTGTTTGTCATCTCCGGCGTCGGCACTGACAACAGATCTGTAGGAGAATTGGCAGGAATTATTGTCGGAATGACCATTCTCTTAAATGTTTTTGTCGCCGGGCCAATTTCGGGAGCTTCCATGAATCCAGCTAGGAGCATTGGACCAGCGATAGTGAAGCGACAATACAAAGGATTATGGGTTTACATCATAGGACCATTGATTGGAGCAATTGCTGGAGCATTTGTCTATAACCTAATGAGATTCACAGACAAGCCACTGAGTGAGATCACCAGAAGCAGCTCATTCTTCATCGGTAGCCAGAAATCATAA 822 47.32 MTTKIDGNEDEEVSKLEEGTLAAAAAIPCPCPSPSPLVLIIQKVMAEVIGTYFVIFTGCGSVVVNKIYGSVTFPGICVVWGLIVMAMVYTVGHISGAHFNPAVTITFAIFRRFPFWQVPIYIVAQVLGSLLASCTLDLMFEVTPENFFGTVPAGSNIQSLVIEIIITFLLLFVISGVGTDNRSVGELAGIIVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQYKGLWVYIIGPLIGAIAGAFVYNLMRFTDKPLSEITRSSSFFIGSQKS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2561332 2564902 + Lag0030892.1 Lac11g0254 586112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0254 273 Gene3D Glycerol uptake facilitator protein. 33 261 IPR023271 -
Lac11g0254 273 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 Pfam Major intrinsic protein 40 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 SUPERFAMILY Aquaporin-like 40 259 IPR023271 -
Lac11g0254 273 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0254 273 PANTHER AQUAPORIN NIP2-1 38 255 IPR034294 -
Lac11g0254 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lac11g0254 273 CDD MIP 42 250 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0254 Lac-Chr11:2561332 Lac1g3444 Lac-Chr1:53840840 5.70E-83 dispersed
Lac11g0254 Lac-Chr11:2561332 Lac8g0645 Lac-Chr8:11004847 3.00E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0254 K09874 - csv:101215315 439.884