Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0297 ATGCGATACGAAATGATTCACTGGAAATTGAACTTCAACTTTGCATGGGGAATCAACCTCAGTTTCTTCATCCTTCTTCCTCCTAATTCATTGGCTGCTTTTCTGCATTCGGTACTTTCTCTCTCTAGAATTCAATTTCTCTTTTACCCCACCCCGTTTTTCGCCGATTTTTGGATGTTTTCTTCTGTCGAGTTAACAAGTGGACTTCAACGGATGGATTTTATGATGGAGGGTCGCGGGGGTAATGGCGGTGGGTCAGGTGATGAACAAGAAGCATCTAACGATCGCAAGGGGAAGAAGACTTACCATCGCCATACTCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGAATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATAAAATTCTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAACGAACGAGCAGACAACTCTGCACTTCGAACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCGTTGAGGAATGTCATCTGCCCGTCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAACGGCAGCGCAATCTCCAAAAACTGCGTCTTGAAAATGCTCACTTAAAAGAAGAGCATGAAAAGGTGTCTAACCTTCTTGCCAAGTATATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCACTCGATTTGTCACCAAGAAGTTCCCTTAGCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTAATATTAAATGGAACAGCAGCACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCCACTGCCTTGGAAGAGTTGATCAGACTTTTGAGGATCGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTTCATCGTGACAGCTACGAAAAAATATTTCCTAGACCCAATCACTTCAAATCTTCTACTGCTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATGTTATTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACTGTCATTATAAATGCGGAGACATTTCATATTATTGATCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTACAGTTGATGTATGAACAAATGCACATATTTTCACCCCTCGTGTCACCTCGGGATTTCTGCTTCCTTCGACATTGTCAGCAGATTGAGCTTGGTGTCTGGGTGATAGTGGATGTTTCCTATGAATTCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGGTGCTCTAAGATTACCTGGGTTGAGCATGTGGAAGTGGATGATAAAACACAAACCCATCGGCTCTATCGGGATCTTGTGTTCAATACTATGGCATATGGAGCCGAACGGTGGGTTTTCACTCTCCAAAGGATGTGTGAGAGATTGGCTTACACATTCAGGGATTGTGCACCTAACCATGAACTTGGAGGAGTGTTGACTTCTCTTGAAGGTAGGAGGAGCATCATGAAGCTGTCACATAGGATGGTAAAAAATTTCTGTGGCATACTGAGCATGTCAGGTAAATTAGATTTCCCTCAATTATCTGAAGTGAACAATACTGGTGTCCGAATCTCTGTTCGGATTAGCTCAGAACTGGGGCAGCCCAGTGGGACAGTCGTTAGTGCTGCGACATCTCTTTGGCTTCCCCTACAACCTGAAAGCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTTTCTAATGGAAACCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCAGGAAACTCGATATCAATAATTCGGCCATTTGTCCCGACCGAGAACAATATGCTAATTCTTCAAGAGAGCTGCATAGATCCACTGGGATCCTTGGTGATATATGCGCCCATCGACATGCCTGCCATGAACATTGCGACAAGCGGTCAGGACTCATCTGACATACCGATACTTCCTTCAGGGTTTGTAATCACAGGGGACGGCCGTGCTCACTCAGGAGTTGGAGCTTCAACCAGTGCAACCTCAGGGAGGCCGAGCGGGTCTCTATTAACTGTAGCCTTCCAGATATTGGTGTCCAGTGTCTCGTCTTCAAAACAGCTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATCAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2346 44.37 MRYEMIHWKLNFNFAWGINLSFFILLPPNSLAAFLHSVLSLSRIQFLFYPTPFFADFWMFSSVELTSGLQRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLESFFRECPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSALRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENAHLKEEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLSQIVASPAVDLISDPVILNGTAAPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRDSYEKIFPRPNHFKSSTARTESSKASGVVTMSAIQLVDVILDADKWADLFPTVIINAETFHIIDPGMPGNRSGALQLMYEQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEFLKDCVTSARCWRLPSGCMIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTMAYGAERWVFTLQRMCERLAYTFRDCAPNHELGGVLTSLEGRRSIMKLSHRMVKNFCGILSMSGKLDFPQLSEVNNTGVRISVRISSELGQPSGTVVSAATSLWLPLQPESIFNFFRDEKARVQWDVLSNGNPVHEIAHILTGVHPGNSISIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDMPAMNIATSGQDSSDIPILPSGFVITGDGRAHSGVGASTSATSGRPSGSLLTVAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 781
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 2949290 2953828 - Lag0030935.1 Lac11g0297 586155
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0297 781 Coils Coil 198 225 - -
Lac11g0297 781 Gene3D - 85 173 - -
Lac11g0297 781 Pfam Homeodomain 99 154 IPR001356 GO:0003677(InterPro)
Lac11g0297 781 CDD homeodomain 99 157 IPR001356 GO:0003677(InterPro)
Lac11g0297 781 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac11g0297 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 86 778 IPR042160 -
Lac11g0297 781 MobiDBLite consensus disorder prediction 76 103 - -
Lac11g0297 781 Coils Coil 155 175 - -
Lac11g0297 781 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677(InterPro)
Lac11g0297 781 FunFam Homeobox-leucine zipper protein HDG1 86 172 - -
Lac11g0297 781 SMART HOX_1 98 160 IPR001356 GO:0003677(InterPro)
Lac11g0297 781 SUPERFAMILY Bet v1-like 541 740 - -
Lac11g0297 781 ProSiteProfiles START domain profile. 287 521 IPR002913 GO:0008289(InterPro)
Lac11g0297 781 SUPERFAMILY Bet v1-like 289 520 - -
Lac11g0297 781 Pfam START domain 298 518 IPR002913 GO:0008289(InterPro)
Lac11g0297 781 CDD START_ArGLABRA2_like 292 517 - -
Lac11g0297 781 SUPERFAMILY Homeodomain-like 86 157 IPR009057 -
Lac11g0297 781 Gene3D - 296 502 IPR023393 -
Lac11g0297 781 SMART START_1 296 518 IPR002913 GO:0008289(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0023 Lac-Chr10:302858 Lac11g0297 Lac-Chr11:2949290 2.10E-209 dispersed
Lac11g0297 Lac-Chr11:2949290 Lac12g1799 Lac-Chr12:34276663 3.20E-163 dispersed
Lac11g0297 Lac-Chr11:2949290 Lac12g0611 Lac-Chr12:6484005 1.30E-164 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22888 PF01852 START 2.40E-37 CL0209 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0297 K09338 - csv:101205899 1298.88