Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0417 | ATGGAGTCGGGGCTATCACCAATCTGGGCAGAGACGGATTCCAAAATCGTATGGAATCTAATTCAGGACCGCGACAATTATCATAATGAGATTGCTCCTCTAATTCACCATCTCAAGCTTTTGGGCACAACAAAGCATATCAGCGGGTTTTTACTAACAAAAAGGGACGACAATAAAGTAGCGCACCAACTGGCTACTCATGCTCGCACAACAAAGCATTCTGAAGTTTGGTTGGAAGACCATCCTTCTTGGATTCACAACCTTGTTGCTAAAGAAATGTCACAAGTGGACGTTTCGACCTTTTCTTCTGTTTCTGGTTCCTTGGAAGAAGAAGAAGAAGAAGAAGAAGTTTGCAAAACTCCCTCTTCGTCCTTTCGATTTCACTCTGTGATTCATTCGTTACTTCATTCACTCGGAGCTTCTGCTTCTTGGGTTTCGCTTCGATTCCCTTTTCGATCTGACTCGTCGGTGATGTCGGTGCCTGCGGCTTCCCTCGCTGCGGGTATATTGAAACAGGTCTTTTGCCGGTTTCCAAAGCAGTTCATTTTATTGTGGTTTGTGATTTCCTTCACCAATGCCTACGTTCCCGATATACCAGCAGCACCTCTGGTTGCACCTGCTGTCCACAATATGCCTTTTCCTGCCAAATTGCCTCTTCACCAACACCACCACCGGAAATATATGTCACCACAGAGTGTGCCAACAGCTGGACTAGCACCAGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACCCGCCCACAAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCCCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGATTACCTCAGCCACCACTTTCTCCTAATGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTACCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCATCCGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGCTTATCTAGGTTAAATATCTCAATGGACATTACTCCGCATGCTGGGATCAGCTTTTCCGCAGTTGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAGGTTCATCTAGACCCTACACTGGTGGGTGATTACAATCTTCTCAATATCACCTGGTTTAAGCCTCCGCCTCCTTCTCAAGCTCCTATAGCTTCTGCATCACCTGTAGCAGCTCCAACATATCATTTTCCAGCCTCAACATCATTGAGTCCTCCTAGTAAAGAACACCATTCCAATCTGACACTTCTTCTTGGCATTGGTGCTGGTTTTCTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTTTATGCACATCTCATCGTGGGAAGAATGAAGCACCTGCATTAGTAGCTGAAAAACCAAGGGTTGAAGACAAAGTGCCTATGGTAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTTACTTATGAAGAGCTTAAAGAGGCAACTAATAACTTTGAAGCAGCGAGCATCTTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGAGTCTTAAGTGATGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTCGAGGTCGAGATGCTTAGTCGGTTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCCGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCTTGTGTTATCCACAGAGACTTTAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAGGTTGCTGACTTCGGTCTGGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGGTATGTCGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAACCTGGTCACATGGGCTAGGCCAATTTTGAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAATATCCGAAGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCAGCGTGCGTCGCTCCCGAGGCTGGCCAACGCCCAACAATGGGCGAAGTTGTACAGTCTCTTAAAATGGTGCAGCGTGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGACCCAATCTTAGACAGTCGTCCACGACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA | 2643 | 45.29 | MESGLSPIWAETDSKIVWNLIQDRDNYHNEIAPLIHHLKLLGTTKHISGFLLTKRDDNKVAHQLATHARTTKHSEVWLEDHPSWIHNLVAKEMSQVDVSTFSSVSGSLEEEEEEEEVCKTPSSSFRFHSVIHSLLHSLGASASWVSLRFPFRSDSSVMSVPAASLAAGILKQVFCRFPKQFILLWFVISFTNAYVPDIPAAPLVAPAVHNMPFPAKLPLHQHHHRKYMSPQSVPTAGLAPASPPYYGPLITSGHPPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPNAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVHLDPTLVGDYNLLNITWFKPPPPSQAPIASASPVAAPTYHFPASTSLSPPSKEHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHRGKNEAPALVAEKPRVEDKVPMVGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRPNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4249214 | 4255061 | - | Lag0031055.1 | Lac11g0417 | 586275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0417 | 880 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 516 | 613 | - | - | |
Lac11g0417 | 880 | ProSitePatterns | Protein kinases ATP-binding region signature. | 542 | 564 | IPR017441 | GO:0005524(InterPro) | |
Lac11g0417 | 880 | SUPERFAMILY | Protein kinase-like (PK-like) | 509 | 813 | IPR011009 | - | |
Lac11g0417 | 880 | MobiDBLite | consensus disorder prediction | 254 | 273 | - | - | |
Lac11g0417 | 880 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 614 | 830 | - | - | |
Lac11g0417 | 880 | PANTHER | OS01G0750732 PROTEIN | 305 | 854 | IPR050885 | - | |
Lac11g0417 | 880 | ProSiteProfiles | Protein kinase domain profile. | 536 | 814 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0417 | 880 | Pfam | Reverse transcriptase-like | 2 | 68 | IPR002156 | GO:0003676(InterPro)|GO:0004523(InterPro) | |
Lac11g0417 | 880 | Pfam | Protein tyrosine and serine/threonine kinase | 539 | 811 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0417 | 880 | Gene3D | Phosphorylase Kinase; domain 1 | 517 | 613 | - | - | |
Lac11g0417 | 880 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 660 | 672 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0417 | 880 | MobiDBLite | consensus disorder prediction | 821 | 860 | - | - | |
Lac11g0417 | 880 | Gene3D | Transferase(Phosphotransferase) domain 1 | 614 | 833 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0417 | Lac-Chr11:4249214 | Lac11g2562 | Lac-Chr11:41686795 | 1.10E-106 | dispersed | |
Lac9g2933 | Lac-Chr9:47120597 | Lac11g0417 | Lac-Chr11:4249214 | 2.70E-70 | dispersed | |
Lac11g0417 | Lac-Chr11:4249214 | Lac4g2984 | Lac-Chr4:48097144 | 2.00E-105 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85724 | PF00069 | Pkinase | 9.10E-44 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0417 | - | - | - | 0.0 |