Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0417 ATGGAGTCGGGGCTATCACCAATCTGGGCAGAGACGGATTCCAAAATCGTATGGAATCTAATTCAGGACCGCGACAATTATCATAATGAGATTGCTCCTCTAATTCACCATCTCAAGCTTTTGGGCACAACAAAGCATATCAGCGGGTTTTTACTAACAAAAAGGGACGACAATAAAGTAGCGCACCAACTGGCTACTCATGCTCGCACAACAAAGCATTCTGAAGTTTGGTTGGAAGACCATCCTTCTTGGATTCACAACCTTGTTGCTAAAGAAATGTCACAAGTGGACGTTTCGACCTTTTCTTCTGTTTCTGGTTCCTTGGAAGAAGAAGAAGAAGAAGAAGAAGTTTGCAAAACTCCCTCTTCGTCCTTTCGATTTCACTCTGTGATTCATTCGTTACTTCATTCACTCGGAGCTTCTGCTTCTTGGGTTTCGCTTCGATTCCCTTTTCGATCTGACTCGTCGGTGATGTCGGTGCCTGCGGCTTCCCTCGCTGCGGGTATATTGAAACAGGTCTTTTGCCGGTTTCCAAAGCAGTTCATTTTATTGTGGTTTGTGATTTCCTTCACCAATGCCTACGTTCCCGATATACCAGCAGCACCTCTGGTTGCACCTGCTGTCCACAATATGCCTTTTCCTGCCAAATTGCCTCTTCACCAACACCACCACCGGAAATATATGTCACCACAGAGTGTGCCAACAGCTGGACTAGCACCAGCATCTCCTCCTTACTATGGGCCTCTTATCACTTCTGGTCACCCGCCCACAAGTTCAAGTTTTTCAAAACCATTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCCCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGATTACCTCAGCCACCACTTTCTCCTAATGCAGCAGACTGTTGCAAACCTGACATGGTGCTGAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTACCCCATAAAAATTGATCTCCTCCTCTTGAATGTATCACAGAATCCTAATTGGAAACTTTTTCTCGAAGAGTTAGCATCCGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGCTTATCTAGGTTAAATATCTCAATGGACATTACTCCGCATGCTGGGATCAGCTTTTCCGCAGTTGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAGGTTCATCTAGACCCTACACTGGTGGGTGATTACAATCTTCTCAATATCACCTGGTTTAAGCCTCCGCCTCCTTCTCAAGCTCCTATAGCTTCTGCATCACCTGTAGCAGCTCCAACATATCATTTTCCAGCCTCAACATCATTGAGTCCTCCTAGTAAAGAACACCATTCCAATCTGACACTTCTTCTTGGCATTGGTGCTGGTTTTCTTTTCATTGCCATTCTATTTGTGTTGATAATTTGTTTATGCACATCTCATCGTGGGAAGAATGAAGCACCTGCATTAGTAGCTGAAAAACCAAGGGTTGAAGACAAAGTGCCTATGGTAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTTACTTATGAAGAGCTTAAAGAGGCAACTAATAACTTTGAAGCAGCGAGCATCTTGGGGGAGGGTGGTTTTGGCAGGGTTTTTAAGGGAGTCTTAAGTGATGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTCGAGGTCGAGATGCTTAGTCGGTTGCATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCCGCTCGAGGACTTGCTTACCTTCATGAAGACTCGCAACCTTGTGTTATCCACAGAGACTTTAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAGGTTGCTGACTTCGGTCTGGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGGTATGTCGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGATGTTTATAGCTATGGAGTTGTTCTTCTTGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCAGGACAGGAGAACCTGGTCACATGGGCTAGGCCAATTTTGAGAGACAAGGATCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAATATCCGAAGGAAGATTTCGTGCGGGTGTGTACCATTGCTGCAGCGTGCGTCGCTCCCGAGGCTGGCCAACGCCCAACAATGGGCGAAGTTGTACAGTCTCTTAAAATGGTGCAGCGTGTTACAGAATACCAAGACTCCATGGTACCATCCTCCAACAACCGACCCAATCTTAGACAGTCGTCCACGACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA 2643 45.29 MESGLSPIWAETDSKIVWNLIQDRDNYHNEIAPLIHHLKLLGTTKHISGFLLTKRDDNKVAHQLATHARTTKHSEVWLEDHPSWIHNLVAKEMSQVDVSTFSSVSGSLEEEEEEEEVCKTPSSSFRFHSVIHSLLHSLGASASWVSLRFPFRSDSSVMSVPAASLAAGILKQVFCRFPKQFILLWFVISFTNAYVPDIPAAPLVAPAVHNMPFPAKLPLHQHHHRKYMSPQSVPTAGLAPASPPYYGPLITSGHPPTSSSFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPNAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVHLDPTLVGDYNLLNITWFKPPPPSQAPIASASPVAAPTYHFPASTSLSPPSKEHHSNLTLLLGIGAGFLFIAILFVLIICLCTSHRGKNEAPALVAEKPRVEDKVPMVGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRPNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4249214 4255061 - Lag0031055.1 Lac11g0417 586275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0417 880 FunFam Receptor-like serine/threonine-protein kinase ALE2 516 613 - -
Lac11g0417 880 ProSitePatterns Protein kinases ATP-binding region signature. 542 564 IPR017441 GO:0005524(InterPro)
Lac11g0417 880 SUPERFAMILY Protein kinase-like (PK-like) 509 813 IPR011009 -
Lac11g0417 880 MobiDBLite consensus disorder prediction 254 273 - -
Lac11g0417 880 FunFam Receptor-like serine/threonine-protein kinase ALE2 614 830 - -
Lac11g0417 880 PANTHER OS01G0750732 PROTEIN 305 854 IPR050885 -
Lac11g0417 880 ProSiteProfiles Protein kinase domain profile. 536 814 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0417 880 Pfam Reverse transcriptase-like 2 68 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lac11g0417 880 Pfam Protein tyrosine and serine/threonine kinase 539 811 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0417 880 Gene3D Phosphorylase Kinase; domain 1 517 613 - -
Lac11g0417 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0417 880 MobiDBLite consensus disorder prediction 821 860 - -
Lac11g0417 880 Gene3D Transferase(Phosphotransferase) domain 1 614 833 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0417 Lac-Chr11:4249214 Lac11g2562 Lac-Chr11:41686795 1.10E-106 dispersed
Lac9g2933 Lac-Chr9:47120597 Lac11g0417 Lac-Chr11:4249214 2.70E-70 dispersed
Lac11g0417 Lac-Chr11:4249214 Lac4g2984 Lac-Chr4:48097144 2.00E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85724 PF00069 Pkinase 9.10E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0417 - - - 0.0