Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0424 ATGGAGAAGAAGAAGGAAGAGATTATAAAGATGGAGGACACTAGCACGAGCGGCGGCGACTGCGGCAGCGGCGGCGGCGGCGGCGGTGGTGGTGGGTATTTGTCATTTTCCGATAATATGATAGCAAATAGTTTCTTGGATTTTTCTGATGGTGAAAAATGCTCTGTTGGGTTCATGGAGCTGCTTGGTCTCAATAATCATGAGTTTAAGGATTACTGTTCCGAGGTTTTCAATCCTCCGGCCACCCCCAATTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGCCGTTAACGACGACCCCACCGCCGCCGCCGCCGCCGATCACAAGGCTGATGATGATGACCCACAACAACAACAACAACAACACAGACCCACTAAACAATTGAAGGCAAAGAAGACGAATGGAAAGAGAGAAAAAGAGGCGAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTCGAAGATGGATATCGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGTTGCACAAGTGCAGCTTGTAATGTAAAGAAGAGAGTTGAACGATCTTATGTTGATCCAACCATTGTGGTGACCACCTATGAAGGCCAACACACTCACCCGAGCCCGGTCCTCACCCGGTCCGCCCTAGGCATTTCCATTCCACCACCGCCCTCCACCGATATATCGGGAGGAGGGTGTGTTGGCATTGCGGCCATGCCATGGCTCAAAGCTACCAACAACTCCCACGAAGGCAACATTCCAGCAATATCTCATCAGTACCTTCAAAACCCGACCTTCTTCACTGTCCAACATACGGATGGCGATTACAACCGCAACCTCATCGGAGCAGCGAACATGGCCGGGTTCCTTCAGGAGAAACGATTCTGCAACCCAAATCCTGCCTTTCTTGCAGACCATGGGCTGCTTCAAGATGTTGTTCCTCCCCACATGCTGAAACAGGAGTAA 981 50.36 MEKKKEEIIKMEDTSTSGGDCGSGGGGGGGGGYLSFSDNMIANSFLDFSDGEKCSVGFMELLGLNNHEFKDYCSEVFNPPATPNSSSVSSASSDAVNDDPTAAAAADHKADDDDPQQQQQQHRPTKQLKAKKTNGKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSYVDPTIVVTTYEGQHTHPSPVLTRSALGISIPPPPSTDISGGGCVGIAAMPWLKATNNSHEGNIPAISHQYLQNPTFFTVQHTDGDYNRNLIGAANMAGFLQEKRFCNPNPAFLADHGLLQDVVPPHMLKQE 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4337707 4340871 + Lag0031062.1 Lac11g0424 586282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0424 326 Gene3D WRKY domain 139 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0424 326 MobiDBLite consensus disorder prediction 81 97 - -
Lac11g0424 326 SUPERFAMILY WRKY DNA-binding domain 146 214 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0424 326 ProSiteProfiles WRKY domain profile. 149 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0424 326 MobiDBLite consensus disorder prediction 104 119 - -
Lac11g0424 326 MobiDBLite consensus disorder prediction 81 138 - -
Lac11g0424 326 MobiDBLite consensus disorder prediction 1 29 - -
Lac11g0424 326 FunFam WRKY transcription factor 57 140 214 - -
Lac11g0424 326 SMART WRKY_cls 154 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0424 326 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0424 326 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 94 230 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0424 Lac-Chr11:4337707 Lac1g3492 Lac-Chr1:54217786 7.40E-37 dispersed
Lac11g0974 Lac-Chr11:10736993 Lac11g0424 Lac-Chr11:4337707 2.40E-42 transposed
Lac11g0424 Lac-Chr11:4337707 Lac4g2544 Lac-Chr4:44646611 7.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22895 PF03106 WRKY 6.60E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0424 - - - 0.0