Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0424 | ATGGAGAAGAAGAAGGAAGAGATTATAAAGATGGAGGACACTAGCACGAGCGGCGGCGACTGCGGCAGCGGCGGCGGCGGCGGCGGTGGTGGTGGGTATTTGTCATTTTCCGATAATATGATAGCAAATAGTTTCTTGGATTTTTCTGATGGTGAAAAATGCTCTGTTGGGTTCATGGAGCTGCTTGGTCTCAATAATCATGAGTTTAAGGATTACTGTTCCGAGGTTTTCAATCCTCCGGCCACCCCCAATTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGCCGTTAACGACGACCCCACCGCCGCCGCCGCCGCCGATCACAAGGCTGATGATGATGACCCACAACAACAACAACAACAACACAGACCCACTAAACAATTGAAGGCAAAGAAGACGAATGGAAAGAGAGAAAAAGAGGCGAGATTTGCATTCATGACGAAGAGCGAAGTTGATCATCTCGAAGATGGATATCGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGTTGCACAAGTGCAGCTTGTAATGTAAAGAAGAGAGTTGAACGATCTTATGTTGATCCAACCATTGTGGTGACCACCTATGAAGGCCAACACACTCACCCGAGCCCGGTCCTCACCCGGTCCGCCCTAGGCATTTCCATTCCACCACCGCCCTCCACCGATATATCGGGAGGAGGGTGTGTTGGCATTGCGGCCATGCCATGGCTCAAAGCTACCAACAACTCCCACGAAGGCAACATTCCAGCAATATCTCATCAGTACCTTCAAAACCCGACCTTCTTCACTGTCCAACATACGGATGGCGATTACAACCGCAACCTCATCGGAGCAGCGAACATGGCCGGGTTCCTTCAGGAGAAACGATTCTGCAACCCAAATCCTGCCTTTCTTGCAGACCATGGGCTGCTTCAAGATGTTGTTCCTCCCCACATGCTGAAACAGGAGTAA | 981 | 50.36 | MEKKKEEIIKMEDTSTSGGDCGSGGGGGGGGGYLSFSDNMIANSFLDFSDGEKCSVGFMELLGLNNHEFKDYCSEVFNPPATPNSSSVSSASSDAVNDDPTAAAAADHKADDDDPQQQQQQHRPTKQLKAKKTNGKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSYVDPTIVVTTYEGQHTHPSPVLTRSALGISIPPPPSTDISGGGCVGIAAMPWLKATNNSHEGNIPAISHQYLQNPTFFTVQHTDGDYNRNLIGAANMAGFLQEKRFCNPNPAFLADHGLLQDVVPPHMLKQE | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4337707 | 4340871 | + | Lag0031062.1 | Lac11g0424 | 586282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0424 | 326 | Gene3D | WRKY domain | 139 | 215 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac11g0424 | 326 | MobiDBLite | consensus disorder prediction | 81 | 97 | - | - | |
Lac11g0424 | 326 | SUPERFAMILY | WRKY DNA-binding domain | 146 | 214 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac11g0424 | 326 | ProSiteProfiles | WRKY domain profile. | 149 | 214 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac11g0424 | 326 | MobiDBLite | consensus disorder prediction | 104 | 119 | - | - | |
Lac11g0424 | 326 | MobiDBLite | consensus disorder prediction | 81 | 138 | - | - | |
Lac11g0424 | 326 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lac11g0424 | 326 | FunFam | WRKY transcription factor 57 | 140 | 214 | - | - | |
Lac11g0424 | 326 | SMART | WRKY_cls | 154 | 213 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac11g0424 | 326 | Pfam | WRKY DNA -binding domain | 155 | 212 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac11g0424 | 326 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 94 | 230 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0424 | Lac-Chr11:4337707 | Lac1g3492 | Lac-Chr1:54217786 | 7.40E-37 | dispersed | |
Lac11g0974 | Lac-Chr11:10736993 | Lac11g0424 | Lac-Chr11:4337707 | 2.40E-42 | transposed | |
Lac11g0424 | Lac-Chr11:4337707 | Lac4g2544 | Lac-Chr4:44646611 | 7.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22895 | PF03106 | WRKY | 6.60E-26 | CL0274 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0424 | - | - | - | 0.0 |