Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0447 ATGAGCTGCTTTAGTTGCTGTGAGGAAGATGAAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGCAAAAAATACAACAGGAAACAATGGAGGTTATCACAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTTCCTACGATACCCGCTGATGAACTATCAGAAGTAACGGCCAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGAAGCTTAGAAGCGGGCAGCCTGCTGCAATCAAGAAGCTAGATGCCAGTAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTTTCAAGGCTGAAGCACGAAAATTTTGTCCAATTGCTCGGTTATTGCATTGATGGAAATTCCCGCATACTAGCATATGAGTATGCTTCTAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAGCCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTTGAGTATTTGCATGAAAAGGCCGAGTCCCATATTATTCATCGTGATATTAAGTCAAGCAATGTACTAATCTTTGATGATGATGTTGCTAAAATTGCTGATTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCATTCAACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCGGAATATGCTATGACTGGTCAATTGAATGCCAAGAGTGACGTATACAGCTTTGGTGTAGTCTTGCTTGAACTTCTGACAGGGAGAAAACCTGTAGATCCTACACTACCGCGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAACTGAGTGAAGATAAAGTTAGGCAGTGTGTCGATGGAAGGCTTGGCGGAGACTACCCCCCAAAAGCAGTAGCAAAGTTGGCAGCTGTTGCAGCCTTGTGTGTGCAATACGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTGA 1089 44.35 MSCFSCCEEDEIQKAADNGGMYAAKNTTGNNGGYHKPEAAPAVTQAVKMQPILVPTIPADELSEVTANFGNDALIGEGSYGRVYYGKLRSGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLGYCIDGNSRILAYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDGRLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4666933 4669829 + Lag0031085.1 Lac11g0447 586305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0447 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Lac11g0447 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0447 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Lac11g0447 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Lac11g0447 362 PIRSF ILK 14 353 - -
Lac11g0447 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Lac11g0447 362 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Lac11g0447 362 FunFam pto-interacting protein 1 145 356 - -
Lac11g0447 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0447 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0447 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0447 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0447 Lac-Chr11:4666933 Lac4g2582 Lac-Chr4:44956306 4.00E-169 dispersed
Lac11g0447 Lac-Chr11:4666933 Lac10g3058 Lac-Chr10:45061822 5.10E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85726 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0447 K13436 - csv:101223136 691.804