Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0454 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTGGGAGATGAGATCGGGAAAGGAGCATATGGGCGAGTCTACAAAGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAACATTGCTCAAGAGGACCTCAACATTATCATGAATTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTCTGAAAACGAAGACTCACCTTCACATAATACTTGAGTATGTGGAGAACGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTGTATCTACATGAGCAAGGTGTAATTCATCGAGATATAAAGGGTGCAAACATACTGACAACCAAAGAGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCCGATGTTAATACACATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCCGACATATGGAGTGTTGGATGTACTGTGATCGAACTACTTACATGCGTACCTCCATATTATGATCTACAACCTATGCCCGCTCTTTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCGGATAGCCTATCACCAGACATCACTGATTTTCTACGCCAGTGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCGAAAACTTTGCTTTCTCATCCTTGGATACTGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTGAGAAACGCTCAACAAGATGGATCAACTGAAGCAGAAATCTCTAGTGGAGACAATCAAAACTCTTGTGAAAGCCCTTCGGCAGAGAAAAATGAAGTTGCTGATTCTGATTTGAAAGCTGATTCGAGGAAGGAGTTGTCATCAGATGTTGCCACTGATACAAGCAAGTCCCAAAAAAATTTTGCTTCAGGCCCCAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGAAGATACCCTATTGGATCAAGTTCCTACCTTATCTATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTGCTACCTCTGAGCCAACTGAGTTTCATGAATCTCATGGTAGAGCCCATGATGAAGTGAAAATGAATGGTGAAGCTCCATTGGCAGAATTAAAAAAAGATGCTTCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATTTGGTTTTGGACCTGAAAGTCAAGATAATAGTTTTGAAAAGGTTTCAAAGATGTCAATTGCTTTGGGAGGAAATGAGCTGAGTAAATTTAGCGACACTCCTGGAGATGCATCCTTAGATGATTTATTTCAACCTTTAGATAAGCTCCCTGGGGGTCAAGCTGCTGAAGCATCAACATCTTTATCTACCCCACAATCAAACATAGGTAATGTGCCAGTAAATGATGTTGGGAGAAATGACCTGGCCACAAAGTTGAGGGCTACAATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAATGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTATCCTTTGCAGGCGGTTGAATTTGGCAGATTAGTTGGTTCATTGAGGCCTGATGAACCCGAAGATATAATTGTATCTGCCTGTCAAAAACTGATTGCCATTTTCCATCAAAGACCTGAGCAGAAAATTGTTTATGTTACACAACATGGTCTACTCCCATTAACAGAGTTGCTTGAAGTTCCAAAAACTCGTATTATATGTTCGGTGCTCCAGCTTATCAATCAGATAGTTAGGGATAACGTTGACTTCCAAGAAAACGCCTGTCTTGTTGGTCTGATTCCTCTGGTGATGGGCTTTGCGGTTCCTGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATCGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTCGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACTCTGTACAGCTTGAATGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCTGGATATCCAGTTGATGGTTTAACTCAACGTCCCCGGTCAGGTCAACTAGATCCTACCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTGTACATGATCAGCCTGATCTTTTGAAAGGCAGGCATGGAATAGTTGATCATCACCTGTCTACTGGAACACCAGAACCTTCTAGGGCTTCAACTTCAAATTCTCAAAGATCAGATGCCATTCAATCCGATCACCGACACTTTTCCGCAGAGGCTGATAGGCCTCAATCAAGCAATACCACAAATGAAGCCTTGGGAACTTCTAAACCGTCAGAGCTAGCATCTTTAGAAAAAGTTGTTAATTTAGCAACCAAGGAACCGTCTGGCTCTGCTTCTAAAGAACATGAAAATGTAGATAGATGGCGAACTGAGCGGGTGGCCAATTCTAACAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGTTTTCCTACAGCATTGTCGGCTACTCAGCAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCTTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCACCTTTCTGGATTGGAGAGACATGAAACTATTATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGATGTTTCTCAACGTGGAAAAGACAATGGAAATCTTGACCCCACTTCTAAGGTGTCTCTTAAAACGGTGGCAAAGAAGGTAGGATCCCTAGTGTCCAATGAAGGAGCTGCATCCACATCTGGAATTGCTTCACAGACGGCATCTGGGGTACTTTCAGGTTCAGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCATCTGGACTTCTTTCGCACATGGTTTCAAGTTTGAATGCTGATGTCGCAAGGGAATACCTGGCGAAGGTGGCTGATCTTCTGCTCGAATTTGCTCAGGCAGATACGACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTTCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACAGATCCAAACTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCAAACCTTGAACTCAAAGAAGGGTCTCTGGTATCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGGCAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATATCAGACTCTCCTCTGAGAAAAGATGCGTTGCCTCTACTGTGCGATATGGCCCATGCATCTCGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTACTAGACGATGAGCTTTGGTCTGTCACGGCATTGGATTCAATTGCTGTTTGCTTGGCTCATGACAATGACAACCGAAAAGTTGAACAGGCTTTGCTGAAAAGGATGCAGTTCAGAAATTGTGCCCTTCCACAACTGTCCATAGAGATTAGTACTGTTGTGCTGCGAGGAGGATGCCAAATGGCTTGTGAGAGTTCCTGTGGAGAAAAATCCAGAGTTTCCAAGGCACCAAAACCAAGAGTCTTCAGTATTATTTATGGAGAAATTGGACGCTGCAGTACCTTTGATATTTTAGCTCATATCAATATTAACTGGACATGTAATTCTAATTGCAGAAAATCTTCCCGAATCAATACGACATTGGCTGTCAATGGATTAACCCCATTGCTTATAGCAAGGCTGGACCATCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCCAAACAATTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGAGATGGACAACGGTCTGGTGGGCAAGTGTTGGTGAAACAAATGGCTACATCTCTGCTTAAAGCACTTCATATAAATACCGTTTTGTAA 4392 42.21 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWILNCRRALHSSLRHSGTLRNAQQDGSTEAEISSGDNQNSCESPSAEKNEVADSDLKADSRKELSSDVATDTSKSQKNFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLATSEPTEFHESHGRAHDEVKMNGEAPLAELKKDASRKHGEKETSTTSGSRSFGFGPESQDNSFEKVSKMSIALGGNELSKFSDTPGDASLDDLFQPLDKLPGGQAAEASTSLSTPQSNIGNVPVNDVGRNDLATKLRATIAQKQMENEMGQANGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLYPLQAVEFGRLVGSLRPDEPEDIIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVRDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYREMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPTHPIFSQYEASFPVHDQPDLLKGRHGIVDHHLSTGTPEPSRASTSNSQRSDAIQSDHRHFSAEADRPQSSNTTNEALGTSKPSELASLEKVVNLATKEPSGSASKEHENVDRWRTERVANSNRTSTDRPPKLVEPASNGFPTALSATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEHDFLMAEFADVSQRGKDNGNLDPTSKVSLKTVAKKVGSLVSNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLRKDALPLLCDMAHASRNSREQLRAHGGLDVYLSLLDDELWSVTALDSIAVCLAHDNDNRKVEQALLKRMQFRNCALPQLSIEISTVVLRGGCQMACESSCGEKSRVSKAPKPRVFSIIYGEIGRCSTFDILAHININWTCNSNCRKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4736736 4758047 + Lag0031092.1 Lac11g0454 586312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0454 1463 SMART serkin_6 20 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 304 1463 IPR052441 -
Lac11g0454 1463 Pfam Protein kinase domain 20 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 MobiDBLite consensus disorder prediction 283 349 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 313 333 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 834 849 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 863 879 - -
Lac11g0454 1463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 SUPERFAMILY Protein kinase-like (PK-like) 17 277 IPR011009 -
Lac11g0454 1463 FunFam MAP3K epsilon protein kinase 1 1072 1219 - -
Lac11g0454 1463 Gene3D Transferase(Phosphotransferase) domain 1 17 308 - -
Lac11g0454 1463 PRINTS Tyrosine kinase catalytic domain signature 127 145 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 PRINTS Tyrosine kinase catalytic domain signature 89 102 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 PRINTS Tyrosine kinase catalytic domain signature 193 215 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 MobiDBLite consensus disorder prediction 899 916 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 283 312 - -
Lac11g0454 1463 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Lac11g0454 1463 SMART arm_5 609 649 IPR000225 GO:0005515(InterPro)
Lac11g0454 1463 SMART arm_5 694 737 IPR000225 GO:0005515(InterPro)
Lac11g0454 1463 SMART arm_5 1150 1194 IPR000225 GO:0005515(InterPro)
Lac11g0454 1463 SMART arm_5 1196 1235 IPR000225 GO:0005515(InterPro)
Lac11g0454 1463 MobiDBLite consensus disorder prediction 466 510 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 389 428 - -
Lac11g0454 1463 FunFam MAP3K epsilon protein kinase 1 571 779 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 490 508 - -
Lac11g0454 1463 FunFam MAP3K epsilon protein kinase 1 17 299 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 373 445 - -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 429 445 - -
Lac11g0454 1463 Gene3D - 575 778 IPR011989 -
Lac11g0454 1463 Gene3D - 1059 1294 IPR011989 -
Lac11g0454 1463 SUPERFAMILY ARM repeat 582 1281 IPR016024 -
Lac11g0454 1463 MobiDBLite consensus disorder prediction 827 935 - -
Lac11g0454 1463 ProSiteProfiles Protein kinase domain profile. 20 267 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0454 1463 MobiDBLite consensus disorder prediction 373 388 - -
Lac11g0454 1463 CDD STKc_Cdc7_like 19 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0454 Lac-Chr11:4736736 Lac12g2311 Lac-Chr12:40265493 8.60E-61 dispersed
Lac11g0454 Lac-Chr11:4736736 Lac11g0043 Lac-Chr11:370305 1.80E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85727 PF00069 Pkinase 1.30E-67 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0454 - - - 0.0