Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0455 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCAAATCGGCGGCGAACAGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGACGATCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAGCCATCGGCCATTCAGCAGAGAGCCGTGAGGCCGATTATCGACGGTCGAGATGTTATTGCTCAGGCTCAATCTGGAACTGGGAAGACCTCCATGATTGCCCTAACTGTATGCCAGATGGTTGATACCACCAGCAGAGAGGTACAGGCATTGATCTTGTCCCCTACGAGAGAATTGGCAACCCAGACAGAGAAAGTTATATTGGCAATTGGAGACTACATTAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGCGAAGATATCAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGAACACTGCGTACCAGAGCCATTAAGTTGCTAGTTCTGGATGAATCTGATGAGATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTCCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCTTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATCCTTGTCAAACGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACATTGACTATCACTCAAGCTGTAATTTTCTGTAACACCAAGCGTAAGGTCGAATGGTTGACTGAGAAGATGCGCAGCAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACCCGTGTCCTAATCACAACTGATGTTTGGGCCCGGGGGCTTGATGTTCAGCAGGTGTCGCTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGGTGTTGCCATTAATTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAA 1233 45.34 MAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIDGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4759330 4763496 - Lag0031093.1 Lac11g0455 586313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0455 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Lac11g0455 410 SMART helicmild6 290 371 IPR001650 -
Lac11g0455 410 SMART ultradead3 56 253 IPR014001 -
Lac11g0455 410 Gene3D - 246 410 IPR027417 -
Lac11g0455 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Lac11g0455 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Lac11g0455 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Lac11g0455 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Lac11g0455 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Lac11g0455 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Lac11g0455 410 Gene3D - 27 245 IPR027417 -
Lac11g0455 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
Lac11g0455 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Lac11g0455 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lac11g0455 410 CDD SF2_C_DEAD 250 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2941 Lac-Chr10:44020294 Lac11g0455 Lac-Chr11:4759330 1.40E-55 dispersed
Lac11g0455 Lac-Chr11:4759330 Lac6g0175 Lac-Chr6:1412049 2.00E-140 dispersed
Lac11g0455 Lac-Chr11:4759330 Lac4g2996 Lac-Chr4:48187090 6.90E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0455 K13025 - csv:101222664 803.897