Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0492 | ATGGGTCGAGGGAAGATTGAGATCAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCCAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGTGTAGAATCTTCAGAGGCTGCGGTAGACGGGCACAAGGTCGAGTATCTTCATCTTCAGAAGCAAGAGCACGAGGAGGTAGACAATTTAAGAGATGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTGCAAAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTATTGATGGAGCAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCGCCAGTCGACTGTCCGCTTCCTGCTTATCTCGAATACTGCTCGCTAGAACAGAAGAACATTGGCATAAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCATTTGGGGCTGCCATCCCATGTTTATTGCAAGAGAAAGGAGGCTGAAAGAGACACTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA | 729 | 44.44 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVESSEAAVDGHKVEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSGSQMGLL | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5108541 | 5112245 | + | Lag0031130.1 | Lac11g0492 | 586350 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0492 | 242 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lac11g0492 | 242 | Gene3D | - | 13 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 188 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac11g0492 | 242 | Coils | Coil | 91 | 111 | - | - | |
Lac11g0492 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | Pfam | K-box region | 91 | 164 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac11g0492 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | ProSiteProfiles | K-box domain profile. | 91 | 202 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac11g0492 | 242 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac11g0492 | 242 | Coils | Coil | 128 | 148 | - | - | |
Lac11g0492 | 242 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0492 | Lac-Chr11:5108541 | Lac2g0801 | Lac-Chr2:6274321 | 1.40E-32 | dispersed | |
Lac11g0492 | Lac-Chr11:5108541 | Lac1g1324 | Lac-Chr1:33290248 | 1.60E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22898 | PF01486 | K-box | 1.10E-14 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0492 | - | - | - | 0.0 |