Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0492 ATGGGTCGAGGGAAGATTGAGATCAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCCAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGTGTAGAATCTTCAGAGGCTGCGGTAGACGGGCACAAGGTCGAGTATCTTCATCTTCAGAAGCAAGAGCACGAGGAGGTAGACAATTTAAGAGATGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTGCAAAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTATTGATGGAGCAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCGCCAGTCGACTGTCCGCTTCCTGCTTATCTCGAATACTGCTCGCTAGAACAGAAGAACATTGGCATAAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCATTTGGGGCTGCCATCCCATGTTTATTGCAAGAGAAAGGAGGCTGAAAGAGACACTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA 729 44.44 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVESSEAAVDGHKVEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSGSQMGLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5108541 5112245 + Lag0031130.1 Lac11g0492 586350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0492 242 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac11g0492 242 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac11g0492 242 Coils Coil 91 111 - -
Lac11g0492 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 Pfam K-box region 91 164 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac11g0492 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 ProSiteProfiles K-box domain profile. 91 202 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac11g0492 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac11g0492 242 Coils Coil 128 148 - -
Lac11g0492 242 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0492 Lac-Chr11:5108541 Lac2g0801 Lac-Chr2:6274321 1.40E-32 dispersed
Lac11g0492 Lac-Chr11:5108541 Lac1g1324 Lac-Chr1:33290248 1.60E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22898 PF01486 K-box 1.10E-14 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0492 - - - 0.0