Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0514 ATGTGTGGTGGTCGAGAACAATCCAATTCTGCATCTACTACATCGGCAAGCTCACCTAACCCCAAAGACATGAATAATCTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAACGATGCAGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTTTCGCTCAACAAATCTGGACTCTGGTATGTTCGTCAAAAGGGCTCGAAACAAGTTGTTCATGAGCATAGAACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATGATGAGGTTGATGTTAATCTCTCGTCTGGTACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCCAGTGGATCTGTGAATGCTGTTGATATTGTTGATTTGCTTTTATCTGCTGGTGCTGACCCGAACTCCAGGGATATTAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCGAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTCGAAGAACTTCTCAATAGTCATTTGAATGGATCCATGGACGTGTCCTCCTTACATTTGTCAATCAAAACGCCTGATTCAGAGTCACCACCACTTTCCTCATTATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATTTCTTCTCCCAAATTTTTAGATGGGTTTGCAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACCGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGACCTTGTTCTCGGGCATATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCTGGGGAGAATGCTCGGAGGAGAGACCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAGTATGCACATGGAGTATTTGAGTGCTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACTAGTTGCAATAGGCGGGTTTGTTTCTTTGCTCACACCAATGAGGAACTAAGGCCATTATATGTGTCTACAGGATCTGCTGTCCCTTCCCCACGATCAATTGGGTCTGCCCCAACTGTAATGGATATGGCTACTGCACTGGGTCTTCTGCCTGGTTCACCTTCATCAGTGTCGGCTTTATCTCCATCTCCATTTACTCAGTCTATGTCTCCCTCTTCGAATGGTGTTTCTCACAATTCTGTGAACTGGCAGCAGCCAAATGTGCCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGATTGAGGTCATCTCTGAATGCGAGGGATATGCCTCTGGAGGATCTGAATGTCTTGCCAGACTTTGACAACCAGCCACGAATTTTGAACGATATGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTTGAAGAGCTATTTTCTTCTGAGATCTCTTCGTCTCCCCGATTCTCTGATCCAGCCGCCAATGTCTTTTCCCCTACGCGCAAGTCAACATTACTAAACCAGTTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGTATTATGTCTCCTAAGAATGTCGATCATCCTTTGTTGCAGGCCTCTTTTGGAGTTTCATCGCCGGGAAGGATGTCACCAAGAAGCACCGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACATCTCCGCACTCTCAGCTCAAGAGAGCTCGGATCCAATGTCCCGAACTCATTGATCGGATCTCCTGGGAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGACGATCATCTTCTTTTGAGATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGTTGGCAGCACCCGGGATGGGCGCTGCGGCATCCGGTGAGGGTCTAACTACTACTAAATCACAATTAGAATCTACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2178 46.42 MCGGREQSNSASTTSASSPNPKDMNNLTVDCEDSFYSLLELASDNDAEGFKRLMESDLFSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYDEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNSRDINGDRPVDVIFVHPKLQKQNTRFRLEELLNSHLNGSMDVSSLHLSIKTPDSESPPLSSLLEDEFPSPPKSISSPKFLDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHNSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDMNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKNVDHPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPNSLIGSPGNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAAPGMGAAASGEGLTTTKSQLESTDHSVIGAWLEQMQLDQLVV 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5348094 5350271 + Lag0031152.1 Lac11g0514 586372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0514 725 MobiDBLite consensus disorder prediction 195 218 - -
Lac11g0514 725 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Lac11g0514 725 PRINTS Ankyrin repeat signature 81 96 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
Lac11g0514 725 Pfam Ankyrin repeats (3 copies) 45 149 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872(InterPro)
Lac11g0514 725 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 PANTHER UNKEMPT FAMILY MEMBER 70 674 IPR045234 -
Lac11g0514 725 MobiDBLite consensus disorder prediction 399 420 - -
Lac11g0514 725 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
Lac11g0514 725 Gene3D - 4 211 IPR036770 -
Lac11g0514 725 SMART c3hfinal6 332 355 IPR000571 GO:0046872(InterPro)
Lac11g0514 725 SMART c3hfinal6 297 323 IPR000571 GO:0046872(InterPro)
Lac11g0514 725 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 322 IPR000571 GO:0046872(InterPro)
Lac11g0514 725 MobiDBLite consensus disorder prediction 1 25 - -
Lac11g0514 725 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
Lac11g0514 725 Gene3D - 297 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2489 Lac-Chr10:38561500 Lac11g0514 Lac-Chr11:5348094 2.70E-246 dispersed
Lac11g0514 Lac-Chr11:5348094 Lac9g2386 Lac-Chr9:43013698 1.10E-125 dispersed
Lac11g0514 Lac-Chr11:5348094 Lac3g0988 Lac-Chr3:8046319 8.10E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22899 PF12796 Ank_2 1.70E-10 CL0465 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0514 - - - 0.0