Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0519 ATGGCGTTGGCTAGTCGCTTGAGATCCACCATCCCTGTCCTCAGCAAGTTTTTGAGATCCGAATCGTCCTGCTCTCCAGTACTGCTCTCAAGAACTTATGCCGCTGCATCGGGGAAAAATGAAGAAAAAGTGAAGGTGCCTCTTGCTTTGTTTGGAGGGTCTGGAAATTATGCCTCTGCTCTGTATCTAGCTGCAGTTAAAGCTAATTCCTTAGACAAGGTGGAATCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGTCCTACATTTGCTCAGTTCACAATGGATCTGTCAGTTCCAGCGGAAACAAGAGTTAAGGCTATCAATGAAATTTCTGCTGAAGCTAAATTTTCAGATGTTGTAAAGAACTTTTTGGTTGTGTTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCTCCACAAGAAGAGAAAGAATTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTCGATATGTCTATTAAAACCAGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTGGTCTTGATGGCCTCTAG 708 42.8 MALASRLRSTIPVLSKFLRSESSCSPVLLSRTYAAASGKNEEKVKVPLALFGGSGNYASALYLAAVKANSLDKVESELVNLVEAIKKSPTFAQFTMDLSVPAETRVKAINEISAEAKFSDVVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVGLDGL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5397621 5400166 - Lag0031157.1 Lac11g0519 586377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0519 235 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
Lac11g0519 235 Gene3D - 53 146 IPR026015 -
Lac11g0519 235 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 PANTHER ATP SYNTHASE DELTA CHAIN 1 229 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Lac11g0519 235 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Lac11g0519 235 NCBIfam ATP synthase F1 subunit delta 56 225 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0519 Lac-Chr11:5397621 Lac2g2448 Lac-Chr2:35650202 7.00E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0519 K02137 - rcu:8272168 340.502