Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g0531 | ATGGTGATGAGCACAGCATGCTCGGGAGAAAAGAACGACGCAGAAAGAATACGATATTTAGTGAAGGAAGCAATGGAGGTACTTACAAAGATATGCTTTGGAGATGTATTGGGGCCATTGAAGAATTTGGGATTCTTGCTTTATGGGAAGAGGGCTCTTGATGTTGGCAGAAGTTCTGATGAACTAATGGAGAACATCTTGAAGGAACATGAAGAAGAAAGTGATGAAAAGAACCCAAAGGATTTGATGGATATTCTCTTGGAAATTCACCAACATGATAATGTTGCAGTTAAGATCACAAGAACCCATATCAAAGCATTTATTATGGATCTCTTCATGGCCGGTACTGACACTTCGTCAGTAGCCATGCAATGGACAATGGCTGAACTCATCAACCATCCTCAAGTGTTCAAAAGGGTTAGAGAGGAGATTGAATCAGTGGTTGGAACATCAGGACGACTTGTAGAAGAAGAAGACATCCCTCAACTCCCTTATTTGCAAGCTGTTGTAAAAGAAACTTTGAGGCTCCACCCACCAGCCCCAGTTACAATAAGAGAATGTCGTCAAAGTTGCAAAATTAGAGGCTATGATGTGCCACAAAAGACAAGTGTGGCAGTCAATCTCTATGCTATCATGAGAGACCCAGAAGTGTGGAGTGAACCAAACGAATTTCGTCCGGAGAGGTTTTTGACTTCGTCGAATCGAGAGATAGATTCAAACTCGAACCAAATGGAGACCAAGGGACAGAGTTTCGACTTCATTCCGTTTGGGGGTGGAAGGAGAGCATGCCCCGGTGCGACGTTGGCATTTAACATGATGAACACAACAATGGCAGCCCTAGTTCAGTGCTTTGATTGGAAGGTGGTTGGAGATGGAAGTGGGGAAGAAGCTAAGGTTGATATGAGACCAGGACAAGGCTTGACTTTAGGCATGGCCAACCCTCTTTTGCTTGTTCCTATTTTACATTTTGATGCATTTGGTGCTTCAATACATAATTAA | 999 | 43.04 | MVMSTACSGEKNDAERIRYLVKEAMEVLTKICFGDVLGPLKNLGFLLYGKRALDVGRSSDELMENILKEHEEESDEKNPKDLMDILLEIHQHDNVAVKITRTHIKAFIMDLFMAGTDTSSVAMQWTMAELINHPQVFKRVREEIESVVGTSGRLVEEEDIPQLPYLQAVVKETLRLHPPAPVTIRECRQSCKIRGYDVPQKTSVAVNLYAIMRDPEVWSEPNEFRPERFLTSSNREIDSNSNQMETKGQSFDFIPFGGGRRACPGATLAFNMMNTTMAALVQCFDWKVVGDGSGEEAKVDMRPGQGLTLGMANPLLLVPILHFDAFGASIHN | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5494181 | 5495378 | - | Lag0031169.1 | Lac11g0531 | 586389 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g0531 | 332 | FunFam | Predicted protein | 112 | 317 | - | - | |
| Lac11g0531 | 332 | SUPERFAMILY | Cytochrome P450 | 2 | 318 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | Gene3D | Cytochrome P450 | 1 | 315 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | P450 superfamily signature | 263 | 274 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | P450 superfamily signature | 168 | 179 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | P450 superfamily signature | 114 | 131 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | P450 superfamily signature | 254 | 263 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | Pfam | Cytochrome P450 | 10 | 292 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 256 | 265 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac11g0531 | 332 | PRINTS | E-class P450 group I signature | 207 | 231 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | E-class P450 group I signature | 263 | 286 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | E-class P450 group I signature | 103 | 120 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | E-class P450 group I signature | 123 | 149 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PRINTS | E-class P450 group I signature | 167 | 185 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac11g0531 | 332 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 1 | 319 | IPR051103 | GO:0016020(PANTHER)|GO:0016709(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2550 | Lac-Chr10:39480771 | Lac11g0531 | Lac-Chr11:5494181 | 4.60E-61 | dispersed | |
| Lac11g0531 | Lac-Chr11:5494181 | Lac11g0534 | Lac-Chr11:5510429 | 1.30E-102 | dispersed | |
| Lac11g0531 | Lac-Chr11:5494181 | Lac11g0533 | Lac-Chr11:5498410 | 4.70E-164 | proximal | |
| Lac11g0531 | Lac-Chr11:5494181 | Lac13g0151 | Lac-Chr13:1076732 | 7.50E-45 | wgd | |
| Lac11g0531 | Lac-Chr11:5494181 | Lac4g2676 | Lac-Chr4:45708659 | 1.10E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g0531 | K23814 | - | vvi:100247724 | 418.698 |