Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0555 ATGGAGTTGGGTTTGAGATTAGGCGATGGTCCTCCATTTGGGTTCCCTCAGAAGCCTCCAAACCCCACTGTTTCTCACAGAGGCCTCGATTTTTGCCTTGCTTTCCAACAAAATCCACAAACCCACAACACAAACGACGTCGTTGCAACAATTTTTTATCCTCCGCCACCGTCTCTGCCGCCGCCGCCGCCGCCTGTTCTTCACCTCGACCTTCTTCCTCCTACTCCTCTCGCCGCCTCTCGCCGATCTTCTCGAACTGATGCTTCAGAAGGAGCAGTAGCTGTTTTGACCGATGTGATAAGCGCAGCGCCACCTTCATCGACGGCGGAGGGCGGCGAATCGCCAAGAAAGGCAATAGTGTGCTCGTCGTTGGAGGTGGAGTTGGAGAAGTACGGCGGCGGAGCGGCGGCGGGAAGCGGCGGGGGATTTGAAGATGGCGACAGAGGTTGGTGTAGAGGCAGCGACGAAGAGGATCAGAATTTGGGATCTCGAAAAAAACTGCGGCTTTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCATACACTTTACCCTAAACAAAAGCTGGAACTTGCAAGAAGATTAAATCTTCGTCCTCGCCAAGTAGAAGTCTGGTTTCAAAACAGAAGAGCAAGAACGAAGCTGAAGCAAACGGAAGTGGACTGTGAATACTTGAAGAAATGCTGCGAAACTCTCACCCAACAGAACAGAAAGCTTCAAAAGGAGCTTCGAGATTTAAAAGCCTTGAAAACCACCGATTCCCTCTTCATGCACTTGCCCGCCACCACTCTCACCATGTGCGCGTCTTGCGAACGCGCCGCCGCCGCCGCCGACTCCAAGGCTTCTGGGTTTTCCTTTTCAAGAACTGGGTCGTCTCCGTTTTCACCAACCGATCCCTCTGCAGACAATAATTAG 927 52.1 MELGLRLGDGPPFGFPQKPPNPTVSHRGLDFCLAFQQNPQTHNTNDVVATIFYPPPPSLPPPPPPVLHLDLLPPTPLAASRRSSRTDASEGAVAVLTDVISAAPPSSTAEGGESPRKAIVCSSLEVELEKYGGGAAAGSGGGFEDGDRGWCRGSDEEDQNLGSRKKLRLSREQSAFLEESFKEHHTLYPKQKLELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQQNRKLQKELRDLKALKTTDSLFMHLPATTLTMCASCERAAAAADSKASGFSFSRTGSSPFSPTDPSADNN 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5674788 5679246 - Lag0031193.1 Lac11g0555 586413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0555 308 MobiDBLite consensus disorder prediction 286 308 - -
Lac11g0555 308 Gene3D - 168 218 - -
Lac11g0555 308 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0555 308 Pfam Homeodomain 164 218 IPR001356 GO:0003677(InterPro)
Lac11g0555 308 SMART halz 220 263 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac11g0555 308 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677(InterPro)
Lac11g0555 308 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac11g0555 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 286 IPR050762 -
Lac11g0555 308 SMART HOX_1 162 224 IPR001356 GO:0003677(InterPro)
Lac11g0555 308 MobiDBLite consensus disorder prediction 1 22 - -
Lac11g0555 308 Coils Coil 233 256 - -
Lac11g0555 308 CDD homeodomain 164 221 IPR001356 GO:0003677(InterPro)
Lac11g0555 308 MobiDBLite consensus disorder prediction 285 308 - -
Lac11g0555 308 SUPERFAMILY Homeodomain-like 158 221 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0555 Lac-Chr11:5674788 Lac5g0372 Lac-Chr5:3914509 2.80E-46 dispersed
Lac2g0959 Lac-Chr2:7578875 Lac11g0555 Lac-Chr11:5674788 2.10E-11 transposed
Lac11g0555 Lac-Chr11:5674788 Lac4g2689 Lac-Chr4:45861947 1.50E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22902 PF00046 Homeodomain 6.00E-15 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0555 K09338 - csv:101208907 223.402