Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0573 ATGGCCATCGAAACTCTTCAGAAGGAGTTCATTTTCCGGTCGAAATTGCCGGATATTTACATTCCGAATCACCTTCCTCTGCATTCGTATTGCCTACAGGATAATAAGGCGAAGATCGGCCACCGGACTTGTCTTGTCAACGGCGTCACCGGCGAATCCTTCACCTACGACGACGTCGATCTCGCCGCTCGCAAGGTCGCCTCCGGATTGAACAAACTCGGCATTGCAAAATGCGATGTGATCATGCTCCTCCTCCCGAACTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCGTACCGCGGCGCGATCATGACGGCGGCGAATCCTTTCTTCACGGCGGCGGAGATCGCGAAGCAAGCGAAAGGATCGAAGGCGAAATTGATCGTGACGCAAGCGTCGTATTACGAGAAAGTGAAGGATATAACAGAGGAATTACCTGATGTTAAGATCATGACCGTGGATTCTTCGCCGGACGGTTGTTTATCGTTCGCCGATTTGATCCAGGCCGACGAAGGCGAGGTTGCGGCGGTGGAGATCCATCCGGACGACGTCGTTGCGCTGCCGTACTCCTCTGGAACGACCGGATTGCCGAAAGGAGTGATGCTAACGCATAAAGGTCTAGTGACGAGTGTGGCTCAGCAAGTGGACGGCGAAAATCCGAATCTGTACTTCCGAAACGACGATGTGATTTTGTGCGTTTTGCCGCTTTTCCATATCTATTCGCTTAATTCGGTTCTGCTCTGCGGATTGAGAGCCGGTGCTACGATTCTGATTATGCCTAAATTCGAGATCGGTTCGCTTTTGAAATTGGTGGAGAAATACAGAGTTTCGATTGCTCCGATTGTGCCGCCGATCGTTCTCGCCATTGCGAAGTCGCCGGACCTCGATAAGTACGATCTGTCGTCGATCAGAATGATCAAATCCGGCGGAGCTCCGCTCGGTAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCCAAGGCAGTGCTCGGCCAGGGATACGGAATGACAGAGGCCGGTCCAGTGCTAACAATGGGCTTAGCATTTGCAAAGGAGCCGTTTCCGATGAAACCAGGCGCCTGCGGCACCGTCGTGAGGAACGCCGAGATGAAGATCGTCGACACCGAGAACGGCGGTTCGTTGCCACGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAGATCATGAAAGGCTATTTGAACAATCCGGAGGCGACGGCCGCCACCATCGACGAGGACGGCTGGTTGCACACCGGCGACATCGGCTTGATCGACGAGGACGACGAGCTCTTCATCGTCGATCGGTTGAAGGAGCTGATCAAGTACAAGGGATTCCAAGTGGCTCCGGCGGAACTCGAAGCTCTGCTGCTCACTCATCCGGTCATCTCCGATGCCGCCGTCGTTCCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCATTCGTGGTGAAATTGAAGAACTCTGAAGTTACTGAGGATGAAATTAAACAATTTATTTCCAAACAGGTGGTGTTCTACAAGAGAATCAACCGGGTGTTTTTCATAGACGCAATTCCGAAATCACCCTCGGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAACTGATTTTCCAAATTCTAATTAA 1641 52.35 MAIETLQKEFIFRSKLPDIYIPNHLPLHSYCLQDNKAKIGHRTCLVNGVTGESFTYDDVDLAARKVASGLNKLGIAKCDVIMLLLPNSPEFVFAFLGASYRGAIMTAANPFFTAAEIAKQAKGSKAKLIVTQASYYEKVKDITEELPDVKIMTVDSSPDGCLSFADLIQADEGEVAAVEIHPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRNDDVILCVLPLFHIYSLNSVLLCGLRAGATILIMPKFEIGSLLKLVEKYRVSIAPIVPPIVLAIAKSPDLDKYDLSSIRMIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTENGGSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDEDGWLHTGDIGLIDEDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLATDFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5816331 5820575 - Lag0031211.1 Lac11g0573 586431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0573 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Lac11g0573 546 Gene3D - 439 541 IPR045851 -
Lac11g0573 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Lac11g0573 546 CDD 4CL 21 534 - -
Lac11g0573 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Lac11g0573 546 Pfam AMP-binding enzyme 35 402 IPR000873 -
Lac11g0573 546 SUPERFAMILY Acetyl-CoA synthetase-like 19 540 - -
Lac11g0573 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Lac11g0573 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
Lac11g0573 546 Gene3D - 5 438 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0573 Lac-Chr11:5816331 Lac4g2711 Lac-Chr4:46070636 1.20E-230 dispersed
Lac10g2997 Lac-Chr10:44550185 Lac11g0573 Lac-Chr11:5816331 1.70E-107 transposed
Lac11g2462 Lac-Chr11:40805916 Lac11g0573 Lac-Chr11:5816331 2.60E-93 transposed
Lac13g0042 Lac-Chr13:318236 Lac11g0573 Lac-Chr11:5816331 1.20E-114 transposed
Lac13g0665 Lac-Chr13:5028590 Lac11g0573 Lac-Chr11:5816331 1.20E-100 transposed
Lac2g0105 Lac-Chr2:785034 Lac11g0573 Lac-Chr11:5816331 7.70E-97 transposed
Lac7g2419 Lac-Chr7:41297922 Lac11g0573 Lac-Chr11:5816331 2.20E-110 transposed
Lac8g2046 Lac-Chr8:38961727 Lac11g0573 Lac-Chr11:5816331 9.80E-28 transposed
Lac9g1420 Lac-Chr9:32082077 Lac11g0573 Lac-Chr11:5816331 5.60E-186 transposed
Lac11g0573 Lac-Chr11:5816331 Lac4g2710 Lac-Chr4:46053276 6.20E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0573 K01904 - csv:101215427 963.755