Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0581 ATGGAGAAGAAGACCTATCCGATAGGTGAAGATTTTTACGTTCTGTATGAGGAGGTTGGGCAGGGGGTGAGTGCTGCGGTTCACCGTGCTCTGTGTAAACCTCTTAACGAGATCGTCGCCGTTAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGATCACCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATAATTTGTGGATTGTTATGCCCTACATGGCTGGGGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGTAATGTTCTCATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCATGCCTTTTTGATTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTTTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGAGATAGAAAATTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAAGCAAGCCCGTTCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCGCTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTGTCACAGAATGAATATAAACGAGGAATTAGTGGATGGAACTTCAATCTCGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGGAGGGAGCTCAAATTCCTTATGTGCTCTTGATGTGCAAGAAAAGAGATTACAATGCCAAAATTTTTCAGAAATTTCAGATACTGAAGAGAATGGCTTGCTGCGGAGACAACCCTCCATGAAAATTAATGATACAGTAGATGGTAAAAAGTCTAGCAACGATTCAACTATTACTGGTTCTTCCTCTCAACATCATTCACCCCGCCAAGATAATCAAACTGAGAATGGTTCCAGTGAAGAGCTTTATTTGGAGAACAGCAAAAAATTTTTGGGGAATACTCCTAATACTAGCCAACATAAAAGAAGTATTTCTTCTAATCCCGCTATTCAACAAGAAGGCAGTTCGCCACTGAACAGAAGAGAGAGTTATGAGACAGAGAAGAATGCTGCAAATGGTGGCAGTGTTGCAATAGGAAACACTTCTCAGGCGGTAGATGATGTGCTTTCCGATTCTTATTCTAAAGATTCCAAGTCATCATTAACAAGTCCAGCAACAAATGACGAGGAACAGGACGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATGTTGATGTAGATAAGGCAGTTGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCGACTCCTGCTACTCCTCTACCTTCTAATCTACCAAGTCCTCTACTGACACCTCTACCTTCATCTGATGCTATTCCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCACAATTGGAGACTTTCCAGCGGAGGGTGTCGTTGATGTCTCAGGGGCACATATAGCAACAATGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTAATTAACGAAGTAACTGAATTACAGTGGAGATTCAAGAGTTGTTATTTCATGAATTGCACCAAGGTCCTCCAAGAGATTTTGATCCAGTGGGAGTGGTTACACAACATGGCAGGGTTTAGGCTTGGACGATTTGGAAGAGGGTTTGGAATCAGGTTCTGGCGGAGTAAGAGCGGATTCAGGGAGGAAGATCCAAATGCTAAGAGATGTAAACGGATCGATGTGGATATCTTTGGTAGCAACGCCGTCGGTGAACAAAGGATTATCGGAAGCAACGGTTTCCTCGGGTCGAGATGTGACTCCAAAAGGGCTCGATTCGTCAAGTGGAGCTTGGATCAGATTCTGCAGACGATGCTTCAAGAGAAATTTGAAGAACACGCTGTAGAGCTTCACAGCCACGCTTGGCATTTCTCTCGGTCTCCGTTCTCAATCCCTCTCGCTCTCCCTCTCTGTTTCCTTCCCTTTCTCCCTCCCTCCCTCTTCTCTCGTGTTTTCAGAATTCAGAGTAAAAATCGCAGAGCCGAATCGGAAGGAGACGACAAAGATATAATCATGGGTGAATAG 2562 42.58 MEKKTYPIGEDFYVLYEEVGQGVSAAVHRALCKPLNEIVAVKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMAGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEGGSSNSLCALDVQEKRLQCQNFSEISDTEENGLLRRQPSMKINDTVDGKKSSNDSTITGSSSQHHSPRQDNQTENGSSEELYLENSKKFLGNTPNTSQHKRSISSNPAIQQEGSSPLNRRESYETEKNAANGGSVAIGNTSQAVDDVLSDSYSKDSKSSLTSPATNDEEQDEKAKAPVIQQKGRFKVTSENVDVDKAVASPILQKSHSMQVITSTPATPLPSNLPSPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQITIGDFPAEGVVDVSGAHIATMEKSLLEAAHEREKDLINEVTELQWRFKSCYFMNCTKVLQEILIQWEWLHNMAGFRLGRFGRGFGIRFWRSKSGFREEDPNAKRCKRIDVDIFGSNAVGEQRIIGSNGFLGSRCDSKRARFVKWSLDQILQTMLQEKFEEHAVELHSHAWHFSRSPFSIPLALPLCFLPFLPPSLFSRVFRIQSKNRRAESEGDDKDIIMGE 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5908676 5919380 + Lag0031219.1 Lac11g0581 586439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0581 853 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0581 853 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 697 IPR047173 GO:0043539(InterPro)
Lac11g0581 853 MobiDBLite consensus disorder prediction 404 478 - -
Lac11g0581 853 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Lac11g0581 853 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Lac11g0581 853 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Lac11g0581 853 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0581 853 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Lac11g0581 853 Coils Coil 657 677 - -
Lac11g0581 853 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lac11g0581 853 CDD STKc_OSR1_SPAK 13 274 - -
Lac11g0581 853 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0581 853 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Lac11g0581 853 MobiDBLite consensus disorder prediction 389 539 - -
Lac11g0581 853 MobiDBLite consensus disorder prediction 487 525 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0581 K08835 - - csv:101211076 1107.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0581 Lac-Chr11:5908676 Lac8g2588 Lac-Chr8:43528216 3.30E-153 dispersed
Lac11g0581 Lac-Chr11:5908676 Lac7g2113 Lac-Chr7:34628092 6.80E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85730 PF00069 Pkinase 2.60E-58 CL0016 Lac PK