Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0588 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATCTCAGGGAGGCTATTAATAATCGACCATCAGCCTCTGGAAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGACTGAAGAAGCGAGGCCAGGGGCTTAGATCTTGGATTCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACTATGATGCGTCGTTGTGATCTACCTGCACGTGATTTACGCTTGCTTGATCCTTTATTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTGGTTAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTAGTAGAGCTACAAAGGCGGTTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGGGGAAGTAGGAATTTCGATAATGTATTTGGAAATACCTCTCCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCAAAAATCAGTACACTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATAAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCATCTATTTCTGCTCCCGTTTCTCCTGTATCTTCACCACCTGATACTCGCAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATTAACATCCAGTTGGATAACGTACGGAATCAGTTGATTCAATTTGAGCTTCTACTCACAACTGCAACATTCGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCAGACGCATTTAAGTGGGTCCTTGTAATTACCGGAGATGGTTAG 1284 42.45 MADLKERLLPPKPASAINLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKIRMESFVYGDQSVTGYRSIDGASISAPVSPVSSPPDTRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLVITGDG 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5970602 5973816 + Lag0031226.1 Lac11g0588 586446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0588 427 Gene3D Magnesium transport protein CorA, transmembrane region 385 425 - -
Lac11g0588 427 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Lac11g0588 427 Coils Coil 228 255 - -
Lac11g0588 427 Pfam Magnesium transporter MRS2-like 326 375 - -
Lac11g0588 427 Pfam Magnesium transporter MRS2-like 57 269 - -
Lac11g0588 427 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 423 IPR045863 -
Lac11g0588 427 Gene3D - 41 124 - -
Lac11g0588 427 CDD Mrs2_Mfm1p-like 53 425 IPR039204 -
Lac11g0588 427 FunFam Magnesium transporter MRS2-1 41 124 - -
Lac11g0588 427 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 424 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0588 Lac-Chr11:5970602 Lac6g0802 Lac-Chr6:6877473 3.30E-101 dispersed
Lac11g0588 Lac-Chr11:5970602 Lac11g2650 Lac-Chr11:42485541 4.30E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0588 K16075 - csv:101217419 777.319