Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0602 ATGGCGGGTGAGGCGGCGCCGACGAGGAATGTTCTTTTTGGGAAATACGAAATGGGTCGTTTATTGGGGAAAGGGACCTTCGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAAAGTGTCGCCATTAAAGTGATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTCCAGCAAATCCGGCGAGAAATTTCTGTAATGGGTTTGGTTCGTCATCCTCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAGTCCAAGGTGTATTTTGTTATGGAGTACGTTAATGGAGGCGAACTGTTTGTGAAATTGTCTCAACAAGGAAAACTGACAGAAGATGGAGCTAGAAAGTACTTTCAGCAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTCGACGAGAATGGGAACTTGAAGGTCTCTGATTTTGGCCTCTCCGCCCTGCCGGAGCAGCTCAGGATCGACGGTTTGCTCCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTGCTCAGAAAGCGGGGCTACGACGGCGCCAAGGCGGATATTTGGTCTTGTGGGGTGGTTTTGTTTGTTTTGCTTGCTGGGACTCTGCCTTTTAGAGCTGATAATGTGATGAAGTTGTTTAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCCATGGAAATGGTTTCTAAGGTTCTTGTTGTTGATCCTGAGAAGAGGGTTTCAATGGCTGAGATAATGGAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGGAAGTGTCATTCAGTGAGAAAGATGAGTTCAACAATGAGATTTCTGAATTGGGAAATCCTAAATTCTTGTTGTCATCTTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAACAAGAAGAAACAAGGCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTATAGCCAAGCTTCAATCTCTGGCTGTGAAACTGAATTTCAAGGCTACTAATCTGAGGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGAAGGAAAGGGAAGTTGACGGTGACCGCGGAGGTTTTCGAGGCTGCGCCCGAGCTGGCGGTCGTCGAGTTCTCGAAGTCGGCCGGTGACACTTTGGAGTACAATAAGTTCTGTGAGAAGGATGTGAGGCCTTCATTAAAGGACATAGTTTGGAGCTGGCAAGGAGAGAATGAGTGCCTATAA 1314 47.03 MAGEAAPTRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLQQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKRGYDGAKADIWSCGVVLFVLLAGTLPFRADNVMKLFRKIFKAEFEFPPWFSSEAMEMVSKVLVVDPEKRVSMAEIMESPWFQKGFTKEVSFSEKDEFNNEISELGNPKFLLSSSSPPFYNAFEFISSMSSGFDLSSLFENKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLREFKVRLQAKEEGRKGKLTVTAEVFEAAPELAVVEFSKSAGDTLEYNKFCEKDVRPSLKDIVWSWQGENECL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6119699 6121012 + Lag0031240.1 Lac11g0602 586460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0602 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 421 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac11g0602 437 FunFam Non-specific serine/threonine protein kinase 304 428 - -
Lac11g0602 437 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0602 437 ProSiteProfiles NAF domain profile. 304 329 IPR018451 GO:0007165(InterPro)
Lac11g0602 437 Gene3D Kinase associated domain 1, KA1 305 429 - -
Lac11g0602 437 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Lac11g0602 437 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0602 437 FunFam Non-specific serine/threonine protein kinase 9 297 - -
Lac11g0602 437 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Lac11g0602 437 Pfam NAF domain 306 361 IPR004041 GO:0007165(InterPro)
Lac11g0602 437 CDD CIPK_C 310 424 - -
Lac11g0602 437 CDD STKc_SnRK3 15 270 - -
Lac11g0602 437 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0602 437 SUPERFAMILY Protein kinase-like (PK-like) 12 283 IPR011009 -
Lac11g0602 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0602 437 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0602 Lac-Chr11:6119699 Lac6g2847 Lac-Chr6:46079680 3.10E-131 dispersed
Lac9g2934 Lac-Chr9:47124427 Lac11g0602 Lac-Chr11:6119699 1.20E-26 dispersed
Lac3g0403 Lac-Chr3:3044570 Lac11g0602 Lac-Chr11:6119699 1.50E-23 transposed
Lac11g0602 Lac-Chr11:6119699 Lac13g0076 Lac-Chr13:566390 6.40E-20 wgd
Lac11g0602 Lac-Chr11:6119699 Lac2g0548 Lac-Chr2:4094340 2.70E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85732 PF00069 Pkinase 2.40E-76 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0602 - - - 0.0