Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0603 ATGGCTGCTGGAGGGTCTAATTCTGGGCAGCCGCAGTTCCTTGCTAGGGCTGGAGATGAGAGTTTTTCGCACGCACCCTTGATTGAGAACCCGGAAACTGATCAGATTGTCGTTCCTGACAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCCTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCGTGTGCTGCCCTTATCATTCAATCCTTGGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAGTCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTTTGACAGGGCTTAGTACACTGTTCCTTCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCGTTTCTTGTATTGACAATTGCAATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCCGACGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCGGCACTGGTGCTCTCTAGGAAAATACCCCGATCTGTTTCTGGCATCAAGGAAGCTTGCAGATTTTATCTGATAGAGAGTGGCTTTGCTCTTATGGTGGCTTTCTTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATTTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACGATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGCAGTTGATTATTATTGCGTCGATGATCTTGTCATTTGAACTCCCTTTTGCTCTCATTCCCCTTCTGAAGTTTACAAGCAGCAAGACCAAGATGGGACCGCATGTCAACTCCACCGCGATTACGGTACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCATAACCCGATTCATCCACGTGCTTCTTCATAACGATCTCCAACTTGTAGCAGTCGTCTTCATAGGGATACTCGGATTTTCAGGCATGGCATTATATTTAGCTGGAATCGCCTATCTAGTTCTCAGAAAGACCAAGGAGATCACTCATTTCTTAGCACTAACAACAGAAGAAAGTCAACGACTGAGTAACGAGCCGAGTAAGACATCGGGATATAATCTCCCGAGCGAAGATATAGAGATCATGTGTCCAGGGATTCTTGCTGGAATCAGTCAACAGGATTATGCGTCCGTATAG 1647 43.23 MAAGGSNSGQPQFLARAGDESFSHAPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKSEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACRFYLIESGFALMVAFFINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGQLIIIASMILSFELPFALIPLLKFTSSKTKMGPHVNSTAITVLTWIIGFLIMAINIYYLITRFIHVLLHNDLQLVAVVFIGILGFSGMALYLAGIAYLVLRKTKEITHFLALTTEESQRLSNEPSKTSGYNLPSEDIEIMCPGILAGISQQDYASV 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6133473 6139116 + Lag0031241.1 Lac11g0603 586461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0603 548 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 499 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 Pfam Natural resistance-associated macrophage protein-like 67 429 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac11g0603 548 NCBIfam Nramp family divalent metal transporter 52 420 - -
Lac11g0603 548 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0603 Lac-Chr11:6133473 Lac8g1824 Lac-Chr8:36534364 2.30E-168 dispersed
Lac11g0603 Lac-Chr11:6133473 Lac1g0302 Lac-Chr1:6949608 5.50E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0603 K21398 - csv:101209649 963.755