Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0603 | ATGGCTGCTGGAGGGTCTAATTCTGGGCAGCCGCAGTTCCTTGCTAGGGCTGGAGATGAGAGTTTTTCGCACGCACCCTTGATTGAGAACCCGGAAACTGATCAGATTGTCGTTCCTGACAAGAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCCTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGGGTTGCTTTGGATCATATTAGTGGCTTCGTGTGCTGCCCTTATCATTCAATCCTTGGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAGTCTGAGTACCCCAAGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCCGAAGTTATAGGAACCGCTTTTGCATTGAATATGCTCTTCAGCATTCCTGTTTGGTGTGGCGTTCTTTTGACAGGGCTTAGTACACTGTTCCTTCTTGCGCTGCAGCAATATGGGATTAGAAAGCTCGAATTCTTGATTGCGTTTCTTGTATTGACAATTGCAATTTGCTTCTTCCTGGAGCTGGGCTATGCAAAGCCCGACGTCGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCGGCACTGGTGCTCTCTAGGAAAATACCCCGATCTGTTTCTGGCATCAAGGAAGCTTGCAGATTTTATCTGATAGAGAGTGGCTTTGCTCTTATGGTGGCTTTCTTCATTAATGTGTCAGTCATTTCTGTTAGTGGTGCAGTTTGCAATTCCCCAGATTTAAATAAGGAGGACCAAATGAGCTGCAATGACTTGGACTTGAATAAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCAAAACTTTTTGCCATTGCTTTGTTAGCATCTGGTCAGAGTTCTACGATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGACGCCATGGATCAGAAACTTTTTAACCCGAAGCTTAGCAATTGTTCCTAGTTTGATTGTTGCAATCATTGGTGGGTCTTCTGGGGCTGGGCAGTTGATTATTATTGCGTCGATGATCTTGTCATTTGAACTCCCTTTTGCTCTCATTCCCCTTCTGAAGTTTACAAGCAGCAAGACCAAGATGGGACCGCATGTCAACTCCACCGCGATTACGGTACTGACATGGATCATCGGTTTCCTCATCATGGCTATAAATATATACTACCTCATAACCCGATTCATCCACGTGCTTCTTCATAACGATCTCCAACTTGTAGCAGTCGTCTTCATAGGGATACTCGGATTTTCAGGCATGGCATTATATTTAGCTGGAATCGCCTATCTAGTTCTCAGAAAGACCAAGGAGATCACTCATTTCTTAGCACTAACAACAGAAGAAAGTCAACGACTGAGTAACGAGCCGAGTAAGACATCGGGATATAATCTCCCGAGCGAAGATATAGAGATCATGTGTCCAGGGATTCTTGCTGGAATCAGTCAACAGGATTATGCGTCCGTATAG | 1647 | 43.23 | MAAGGSNSGQPQFLARAGDESFSHAPLIENPETDQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKSEYPKVQNFILWILAEIAIVACDIPEVIGTAFALNMLFSIPVWCGVLLTGLSTLFLLALQQYGIRKLEFLIAFLVLTIAICFFLELGYAKPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVSGIKEACRFYLIESGFALMVAFFINVSVISVSGAVCNSPDLNKEDQMSCNDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLKLTPWIRNFLTRSLAIVPSLIVAIIGGSSGAGQLIIIASMILSFELPFALIPLLKFTSSKTKMGPHVNSTAITVLTWIIGFLIMAINIYYLITRFIHVLLHNDLQLVAVVFIGILGFSGMALYLAGIAYLVLRKTKEITHFLALTTEESQRLSNEPSKTSGYNLPSEDIEIMCPGILAGISQQDYASV | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6133473 | 6139116 | + | Lag0031241.1 | Lac11g0603 | 586461 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0603 | 548 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 32 | 499 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 339 | 358 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 126 | 152 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 154 | 173 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 229 | 252 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 179 | 200 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 399 | 418 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | PRINTS | Natural resistance-associated macrophage protein signature | 367 | 384 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | Hamap | Divalent metal cation transporter MntH [mntH]. | 32 | 455 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | Pfam | Natural resistance-associated macrophage protein-like | 67 | 429 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
Lac11g0603 | 548 | NCBIfam | Nramp family divalent metal transporter | 52 | 420 | - | - | |
Lac11g0603 | 548 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 46 | 423 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0603 | Lac-Chr11:6133473 | Lac8g1824 | Lac-Chr8:36534364 | 2.30E-168 | dispersed | |
Lac11g0603 | Lac-Chr11:6133473 | Lac1g0302 | Lac-Chr1:6949608 | 5.50E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0603 | K21398 | - | csv:101209649 | 963.755 |