Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0608 ATGGACACCGAGGAAGCTCCGTCGACACCGGTGACGCCGGGGACGCCCGGAGCTCCGCTTTTTGGAGGACACAAGGGAAATCACCATGGAAGTGAAAATGGTAAAAGATCTCTTCTCAAAAGTTGCATCTCCTTCAATGTTGATGATTGGAGCACTGATGGAGGCTTATCTAAAGTCTCTTGTTCATTGCCATCCCCTCCTGTCTCTCTTGCAAGAAAGGTGGGAGCGGAGTTCATTGGCACTCTGATGCTCATCTTTGCTGGAACTGCCACCGCCATTGTGAACCAAAAGACACAAGGAACCGAAACGCTCATCGGCCTGGCGGCCTCTACCGGTCTTGCAGTGATGATCGTCATCTTGTCGACCGGCCACATCTCCGGAGCCCATCTGAACCCCGCAATCACCATGGCTTTCGCTGCCTTGAAGCACTTTCCATGGAAGAATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTCTATGTGCTTCATTTGCATTGAAATGGATCTTTGATCCCATAATGGGGGGAGGAGTGACTGTTCCTTCATGTGGATATGCCCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACCGCCGTCGCGACCGACACTCGGGCTGTGGGAGAGTTGGCGGGAATCGCGGTGGGAGCAACAGTCATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTGAGAACATTGGGACCAGCCATTGCTGCAAACAACTTTAGAGCCATATGGATTTACCTCACAGCTCCCATATTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCTGACGAGGATGGCGATGCACGTGCCGCAAGAAGCTTTCGAAGATGA 894 50.78 MDTEEAPSTPVTPGTPGAPLFGGHKGNHHGSENGKRSLLKSCISFNVDDWSTDGGLSKVSCSLPSPPVSLARKVGAEFIGTLMLIFAGTATAIVNQKTQGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAITMAFAALKHFPWKNVPVYIGAQMVASLCASFALKWIFDPIMGGGVTVPSCGYAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDEDGDARAARSFRR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6231782 6236002 + Lag0031246.1 Lac11g0608 586466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0608 297 MobiDBLite consensus disorder prediction 1 33 - -
Lac11g0608 297 FunFam Aquaporin NIP2-1 60 292 - -
Lac11g0608 297 PANTHER AQUAPORIN NIP2-1 66 285 IPR034294 -
Lac11g0608 297 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Lac11g0608 297 Pfam Major intrinsic protein 69 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 SUPERFAMILY Aquaporin-like 69 285 IPR023271 -
Lac11g0608 297 Gene3D Glycerol uptake facilitator protein. 61 289 IPR023271 -
Lac11g0608 297 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac11g0608 297 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0608 Lac-Chr11:6231782 Lac11g1797 Lac-Chr11:32512416 3.90E-85 dispersed
Lac11g0608 Lac-Chr11:6231782 Lac11g1795 Lac-Chr11:32486240 1.50E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0608 K09874 - csv:101207376 515.768