Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0615 ATGGCGAGACCTCAACAGCGCTATCGAGGAGTCCGGCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGAACTTTCGAAACCGCCGAAGACGCCGCCAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCTCTAACAATCTCCCAACCAATCACAACGCGCCACCTCACTCTTCATCGGCGCCGCCGCCGCCGTCCAAGCTTCTAACTCCGACATTGATCGACAAGTTGCAGAGATGTCGAATGGCTTCTCTCCAAATGGCCAAAAAGCAAATCCCCACCAAAACCCACTTCGCCGACCGCATATCCACCGACCCAAGTCGCTGTCAGGCCACCAAACTCGACGGCGGCGGCGGCGGTCTCTGGCCGGAGACGGACGGCAAATGGGTCTCCGGCGGAGAGGCTCAGGAGGTTGGCCGGCTTGAAGACGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGCTCCTTTGAATTTTGCCCTAATAATAATAATATTGGTTCTATAAATAATTAG 558 53.76 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCSNNLPTNHNAPPHSSSAPPPPSKLLTPTLIDKLQRCRMASLQMAKKQIPTKTHFADRISTDPSRCQATKLDGGGGGLWPETDGKWVSGGEAQEVGRLEDDHVEQMIQELLDLGSFEFCPNNNNIGSINN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6312121 6313379 + Lag0031253.1 Lac11g0615 586473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0615 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 99 IPR050913 -
Lac11g0615 185 Pfam AP2 domain 7 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677(InterPro)
Lac11g0615 185 CDD AP2 6 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 SMART rav1_2 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0615 185 FunFam Ethylene-responsive transcription factor 2 6 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0615 Lac-Chr11:6312121 Lac6g0608 Lac-Chr6:5165481 7.10E-37 dispersed
Lac11g0615 Lac-Chr11:6312121 Lac2g0562 Lac-Chr2:4252667 9.00E-32 wgd
Lac11g0615 Lac-Chr11:6312121 Lac4g2752 Lac-Chr4:46384071 1.40E-37 wgd
Lac11g0615 Lac-Chr11:6312121 Lac6g0607 Lac-Chr6:5159312 5.60E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22906 PF00847 AP2 3.30E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0615 - - - 0.0