Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0648 ATGTTTTGCTGTGGAATTGGTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCATTGAAGGAATTACACTCAGCTACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTACTGGGGTCAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTTTGGAGCAATAAAGCAGACATGGAGTTTTCTGTGGAAGTTGAGATACTGGCTCGAGTCAGGCACAAGAATCTATTGAGTTTACGTGGCTACTGTGCTGAAGGGCAAGAGCGGTTGATCGTGTATGACTACATGCCGAATCTAAGTCTCCTCTCTCATCTACATGGACATCACTCATCAGAATGCCAACTCGATTGGAAACGCCGAATGAAAATCGCTATCGGGTCTGCTGAGGGAATTACCTATCTTCACCACCAAGCGACTCCACATATCATTCATCGAGACATCAAAGCTAGTAATGTTTTACTTGACCCTGATTTCCAAGCTCGTGTAGCTGACTTCGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTCGGATACCTCGCACCTGAATATGCTATGTTAGGGAAGGCATCAGAGAGTTGTGACGTATACAGCTTCGGCATTCTCCTTCTCGAGCTCGCCACCGGCAGGAAACCTCTCGAGAAGTTGAGTGCAACAATGAAACGCACAATCACAGACTGGGCGCTGCCAATGGTAGTAGAGAAGAAATTCGAAGAACTTGCAGACCCAAAGCTAAACGGAGACTACAACGCAGACGAGCTAAAGAGAGTCGTCCTTGTCGCACTCATTTGTTCCCATTCACGGCCTGAGAAACGACCGACCATGCTCGAGGTCGTGGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTAGCCAAGTTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGGTGCACAAACTACAGATGTATCAGCTGGTGAAGATAGCTCAGATTTCATATCAGAAGAAAAGGATTCAAAAGAGGAAGTGAAAGAGAATTCAACACAAAACCCACATGAGAATAGTAGCTAA 1107 44.99 MFCCGIGSDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECQLDWKRRMKIAIGSAEGITYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGRKPLEKLSATMKRTITDWALPMVVEKKFEELADPKLNGDYNADELKRVVLVALICSHSRPEKRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVGAQTTDVSAGEDSSDFISEEKDSKEEVKENSTQNPHENSS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6615294 6618198 - Lag0031286.1 Lac11g0648 586506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0648 368 Coils Coil 300 320 - -
Lac11g0648 368 ProSitePatterns Protein kinases ATP-binding region signature. 41 63 IPR017441 GO:0005524(InterPro)
Lac11g0648 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 111 322 - -
Lac11g0648 368 FunFam PTI1-like tyrosine-protein kinase At3g15890 7 110 - -
Lac11g0648 368 MobiDBLite consensus disorder prediction 325 368 - -
Lac11g0648 368 SMART serkin_6 35 306 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0648 368 PANTHER OS01G0750732 PROTEIN 17 337 IPR050885 -
Lac11g0648 368 MobiDBLite consensus disorder prediction 342 360 - -
Lac11g0648 368 CDD STKc_IRAK 41 308 - -
Lac11g0648 368 Gene3D Phosphorylase Kinase; domain 1 7 110 - -
Lac11g0648 368 ProSiteProfiles Protein kinase domain profile. 35 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0648 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0648 368 Gene3D Transferase(Phosphotransferase) domain 1 111 324 - -
Lac11g0648 368 SUPERFAMILY Protein kinase-like (PK-like) 18 306 IPR011009 -
Lac11g0648 368 Pfam Protein kinase domain 36 303 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0648 368 MobiDBLite consensus disorder prediction 326 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0648 Lac-Chr11:6615294 Lac3g0281 Lac-Chr3:2006878 3.40E-115 dispersed
Lac11g0648 Lac-Chr11:6615294 Lac6g2998 Lac-Chr6:47585561 1.10E-76 transposed
Lac11g0648 Lac-Chr11:6615294 Lac3g0903 Lac-Chr3:7322582 1.10E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85733 PF00069 Pkinase 2.00E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0648 - - - 0.0