Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0681 | ATGGCGAAAGAAAAGAAATTCAGAGGAGTGAGGCAACGCAGTTGGGGCTCATGGGTCTCTGAAATTCGCCACCCTCTTCTAAAGAGAAGAGTTTGGTTGGGGACGTTCGAAACGGCCGACGACGCAGCCCGAGCCTACGACGAGGCCGCCGTTCTCATGAGTGGTCGAACTGCCAAAACAAACTTTCCAATCACCGCTACCGTCAAGAGCGAAGCCAGAAATTTTCCTCCATCTCTGAACTCTACTATCTCAAGCATGGTGTCATCACCGTTATCGGAGACTCTTAACGCCAAACTTCGCAAGTGTTGCAATTCTCTACCTCGTTCCTTAACTTGCCTCCGTCTCGACACGGAGAGTTGTCGCATCGGCGTCTGGCAAAGGCGTGCAGGACATCGTCGAGTGGCCGACTCGAACTGGGTGATGATGGTGAAGCTTGAGAAGAAGAACGACGACGAATTCCAAGCGACAGAGTCACCGGAAAAGGGCATGGAAGAGGTAAAATTATCAAGTACTGAAGAAAGTTTAGATGATGAGGAAAAGGCTGCTTTACAAATGATTGAAGAACTCTTGAACAAGATATGA | 582 | 49.14 | MAKEKKFRGVRQRSWGSWVSEIRHPLLKRRVWLGTFETADDAARAYDEAAVLMSGRTAKTNFPITATVKSEARNFPPSLNSTISSMVSSPLSETLNAKLRKCCNSLPRSLTCLRLDTESCRIGVWQRRAGHRRVADSNWVMMVKLEKKNDDEFQATESPEKGMEEVKLSSTEESLDDEEKAALQMIEELLNKI | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7060658 | 7061671 | + | Lag0031319.1 | Lac11g0681 | 586539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0681 | 193 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Lac11g0681 | 193 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | Coils | Coil | 168 | 192 | - | - | |
Lac11g0681 | 193 | MobiDBLite | consensus disorder prediction | 150 | 177 | - | - | |
Lac11g0681 | 193 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 3 | 152 | IPR050913 | - | |
Lac11g0681 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0681 | 193 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0681 | Lac-Chr11:7060658 | Lac6g0608 | Lac-Chr6:5165481 | 3.20E-24 | dispersed | |
Lac11g0681 | Lac-Chr11:7060658 | Lac2g0610 | Lac-Chr2:4591556 | 2.10E-31 | wgd | |
Lac11g0681 | Lac-Chr11:7060658 | Lac3g0807 | Lac-Chr3:6412484 | 1.70E-44 | wgd | |
Lac11g0681 | Lac-Chr11:7060658 | Lac6g2931 | Lac-Chr6:46959924 | 3.30E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22908 | PF00847 | AP2 | 6.20E-11 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0681 | - | - | - | 0.0 |