Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0681 ATGGCGAAAGAAAAGAAATTCAGAGGAGTGAGGCAACGCAGTTGGGGCTCATGGGTCTCTGAAATTCGCCACCCTCTTCTAAAGAGAAGAGTTTGGTTGGGGACGTTCGAAACGGCCGACGACGCAGCCCGAGCCTACGACGAGGCCGCCGTTCTCATGAGTGGTCGAACTGCCAAAACAAACTTTCCAATCACCGCTACCGTCAAGAGCGAAGCCAGAAATTTTCCTCCATCTCTGAACTCTACTATCTCAAGCATGGTGTCATCACCGTTATCGGAGACTCTTAACGCCAAACTTCGCAAGTGTTGCAATTCTCTACCTCGTTCCTTAACTTGCCTCCGTCTCGACACGGAGAGTTGTCGCATCGGCGTCTGGCAAAGGCGTGCAGGACATCGTCGAGTGGCCGACTCGAACTGGGTGATGATGGTGAAGCTTGAGAAGAAGAACGACGACGAATTCCAAGCGACAGAGTCACCGGAAAAGGGCATGGAAGAGGTAAAATTATCAAGTACTGAAGAAAGTTTAGATGATGAGGAAAAGGCTGCTTTACAAATGATTGAAGAACTCTTGAACAAGATATGA 582 49.14 MAKEKKFRGVRQRSWGSWVSEIRHPLLKRRVWLGTFETADDAARAYDEAAVLMSGRTAKTNFPITATVKSEARNFPPSLNSTISSMVSSPLSETLNAKLRKCCNSLPRSLTCLRLDTESCRIGVWQRRAGHRRVADSNWVMMVKLEKKNDDEFQATESPEKGMEEVKLSSTEESLDDEEKAALQMIEELLNKI 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7060658 7061671 + Lag0031319.1 Lac11g0681 586539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0681 193 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Lac11g0681 193 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 Coils Coil 168 192 - -
Lac11g0681 193 MobiDBLite consensus disorder prediction 150 177 - -
Lac11g0681 193 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 152 IPR050913 -
Lac11g0681 193 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0681 193 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0681 Lac-Chr11:7060658 Lac6g0608 Lac-Chr6:5165481 3.20E-24 dispersed
Lac11g0681 Lac-Chr11:7060658 Lac2g0610 Lac-Chr2:4591556 2.10E-31 wgd
Lac11g0681 Lac-Chr11:7060658 Lac3g0807 Lac-Chr3:6412484 1.70E-44 wgd
Lac11g0681 Lac-Chr11:7060658 Lac6g2931 Lac-Chr6:46959924 3.30E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22908 PF00847 AP2 6.20E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0681 - - - 0.0