Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0737 ATGGATTTCTGGCCGGAATTTCTCGCCAGCAGCTGGGGAAAAGAGTTCGTCGCCGGCGGAATCGGCGGCGTCGCCGGCGTCGTCTCCGGCTACCCACTCGACACCCTCCGCATTCGACAACAACACTCCACCTCCGGCTCCGCCATCAGCGTCCTCCGCAACATCATGTCCAACGGCGGCCCCGCCGCCCTCTACAGAGGAATGGGCGCTCCACTCGCTTCCGTCACTTTTCAGAACGCCATCGTTTTCCAGACGAACGCCGTGCTGTGCAGGGCATTTGATCCGGCGGCGAGTGAGACCCGTCCGCCGTCGTACAAGGCGGTGGCATTAGGCGGATTCGGCACCGGAGCATTACAGAGCCTGATTCTAACGCCGGTGGAGCTGGTGAAGATCCGTCTTCAATTACAGGACTTGGGAAATTCAAGCCACTCAGATCTGAGCTCGTCTCGGCCCGGGCCGATGCAGGTTGCGAAGAACATTTTCAAAACCGAAGGCTACAGAGGGCTATACAGAGGCTTAACAATCACGATGCTCAGAGACGCTCCTTCTCACTGTTTTTACTTTGGGACTTACGAATTCATGAGAGAGAAGCTTCATCCCGGCTGCAGAAACTCCGGCCAAGAGACGTTGAGAACGATGCTCGTCGCCGGCGGCCTGGCCGGCGTCGCCAGCTGGGTTTGCTGCTACCCACTCGACGTGGTGAAAACCAGACTTCAAGCTCAGTCCAAATTCTCCTTTCAAAAGTACAGTGGAATCATGGATTGTTTCTACAAGAGCGTCAAGGAAGAAGGCTACAGTGTTCTTTGGCGCGGATTGGGAACCGCCATTGCCAGAGCTTTCGTGGTCAATGGCGCCATTTTCTCTGCTTATGAACTCAGCTTGAGATGTCTGTTCAGCAATGGCGGATTTCATGCTGAAAACACGATTTGA 930 55.48 MDFWPEFLASSWGKEFVAGGIGGVAGVVSGYPLDTLRIRQQHSTSGSAISVLRNIMSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAASETRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDLGNSSHSDLSSSRPGPMQVAKNIFKTEGYRGLYRGLTITMLRDAPSHCFYFGTYEFMREKLHPGCRNSGQETLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFSFQKYSGIMDCFYKSVKEEGYSVLWRGLGTAIARAFVVNGAIFSAYELSLRCLFSNGGFHAENTI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7733082 7734126 + Lag0031375.1 Lac11g0737 586595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0737 309 PRINTS Mitochondrial carrier protein signature 170 188 IPR002067 GO:0055085(InterPro)
Lac11g0737 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Lac11g0737 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Lac11g0737 309 PRINTS Mitochondrial carrier protein signature 217 239 IPR002067 GO:0055085(InterPro)
Lac11g0737 309 Gene3D Mitochondrial carrier domain 9 301 IPR023395 -
Lac11g0737 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Lac11g0737 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 8 297 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
Lac11g0737 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Lac11g0737 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 296 IPR018108 -
Lac11g0737 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 197 IPR018108 -
Lac11g0737 309 Pfam Mitochondrial carrier protein 211 298 IPR018108 -
Lac11g0737 309 Pfam Mitochondrial carrier protein 109 198 IPR018108 -
Lac11g0737 309 Pfam Mitochondrial carrier protein 11 87 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0737 K15109 - - csv:101222749 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0737 Lac-Chr11:7733082 Lac11g2408 Lac-Chr11:40340593 7.00E-45 dispersed
Lac10g3242 Lac-Chr10:46490785 Lac11g0737 Lac-Chr11:7733082 3.30E-26 transposed
Lac2g2589 Lac-Chr2:39443175 Lac11g0737 Lac-Chr11:7733082 2.40E-14 transposed
Lac8g1658 Lac-Chr8:34658460 Lac11g0737 Lac-Chr11:7733082 1.70E-06 transposed
Lac11g0737 Lac-Chr11:7733082 Lac4g2872 Lac-Chr4:47263774 3.60E-126 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g3358 . 1 407 Antiporters AT5G46110 79.9 4.1e-173 605.1
Lac13g0371 . 7 413 Antiporters AT5G46110 66.7 4.8e-150 528.5
Lac2g1379 . 1 393 Antiporters AT5G54800 72.8 1.9e-156 549.7
Lac5g1426 . 44 395 Antiporters AT5G54800 79.5 2.5e-156 549.3
Lac1g3227 . 46 391 Antiporters AT5G54800 79.8 2.8e-152 535.8
Lac8g2577 . 135 479 Antiporters AT3G01550 64.2 1.1e-119 427.6
Lac10g0453 . 53 417 Antiporters AT3G01550 58.2 8.9e-111 397.9
Lac10g0453 . 1 419 Antiporters AT5G33320 71.0 8.3e-155 544.3
Lac8g2577 . 131 482 Antiporters AT5G33320 58.7 2.4e-109 393.3
Lac1g3227 . 1 388 Antiporters AT1G61800 75.5 8.4e-163 570.9
Lac5g1426 . 1 396 Antiporters AT1G61800 73.4 3.3e-159 558.9
Lac2g1379 . 24 403 Antiporters AT1G61800 73.5 2.8e-158 555.8
Lac7g0352 . 106 405 Antiporters AT1G61800 52.6 8.3e-86 315.1
Lac7g0352 . 1 417 Antiporters AT5G17630 71.6 3.8e-155 545.4
Lac5g1426 . 89 394 Antiporters AT5G17630 55.7 8.7e-91 331.6
Lac1g3227 . 92 389 Antiporters AT5G17630 55.1 7.4e-90 328.6
Lac2g1379 . 81 393 Antiporters AT5G17630 54.1 1.6e-89 327.4
Lac5g0759 . 30 399 Antiporters AT3G13320 80.3 1.2e-162 570.5
Lac9g1936 . 72 449 Antiporters AT3G13320 77.6 6.0e-159 558.1
Lac12g2500 . 137 503 Antiporters AT3G13320 76.6 1.4e-155 547.0
Lac1g1873 . 67 433 Antiporters AT3G13320 50.1 2.0e-93 340.5
Lac1g1873 . 5 432 Antiporters AT2G38170 71.0 3.9e-164 575.5
Lac10g3212 . 8 421 Antiporters AT2G38170 64.5 2.0e-144 510.0
Lac1g1873 . 1 400 Antiporters AT3G51860 71.6 2.9e-151 532.7
Lac10g3212 . 4 394 Antiporters AT3G51860 66.8 1.1e-139 494.2
Lac5g0759 . 30 370 Antiporters AT3G51860 52.2 2.3e-84 310.5
Lac9g1936 . 64 416 Antiporters AT3G51860 51.1 2.0e-83 307.4
Lac1g1873 . 36 440 Antiporters AT5G01490 61.0 1.2e-133 474.2
Lac10g3212 . 8 428 Antiporters AT5G01490 58.6 1.4e-131 467.2
Lac12g2500 . 135 504 Antiporters AT5G01490 50.5 5.0e-92 335.9
Lac5g0759 . 29 399 Antiporters AT1G55720 76.3 1.2e-151 533.9
Lac9g1936 . 72 445 Antiporters AT1G55720 74.4 7.5e-149 524.6
Lac12g2500 . 137 503 Antiporters AT1G55720 72.0 8.0e-143 504.6
Lac5g0759 . 19 399 Antiporters AT1G55730 79.0 6.2e-164 574.7
Lac9g1936 . 73 445 Antiporters AT1G55730 78.9 2.2e-161 566.2
Lac12g2500 . 137 503 Antiporters AT1G55730 76.6 2.8e-156 549.3
Lac3g2313 . 4 534 Antiporters AT5G27150 78.0 4.8e-235 811.2
Lac4g2363 . 25 532 Antiporters AT5G27150 71.1 1.2e-204 710.3
Lac12g2377 . 22 478 Antiporters AT5G27150 76.1 1.4e-194 676.8
Lac4g2362 . 26 519 Antiporters AT5G27150 60.8 7.9e-161 564.7
Lac2g1460 . 7 217 Antiporters AT5G27150 67.8 1.0e-75 282.0
Lac3g2313 . 5 533 Antiporters AT3G06370 70.6 3.1e-205 712.2
Lac12g2377 . 22 475 Antiporters AT3G06370 77.3 2.7e-193 672.5
Lac4g2363 . 25 534 Antiporters AT3G06370 67.2 2.4e-189 659.4
Lac4g2362 . 26 536 Antiporters AT3G06370 59.1 4.1e-157 552.4
Lac2g1460 . 7 217 Antiporters AT3G06370 66.4 4.0e-75 280.0
Lac3g2313 . 18 520 Antiporters AT5G55470 59.6 8.5e-168 587.8
Lac4g2363 . 18 518 Antiporters AT5G55470 56.0 1.3e-155 547.4
Lac12g2377 . 19 491 Antiporters AT5G55470 59.5 2.2e-155 546.6
Lac4g2362 . 26 519 Antiporters AT5G55470 53.8 1.5e-135 480.7
Lac2g1460 . 7 217 Antiporters AT5G55470 77.3 1.1e-87 321.6
Lac2g1459 . 2 148 Antiporters AT5G55470 72.2 5.2e-56 216.5
Lac3g2313 . 10 537 Antiporters AT3G05030 78.8 5.6e-239 824.3
Lac4g2363 . 25 535 Antiporters AT3G05030 70.1 4.8e-206 714.9
Lac12g2377 . 22 475 Antiporters AT3G05030 77.6 1.1e-199 693.7
Lac4g2362 . 26 519 Antiporters AT3G05030 61.8 1.0e-163 574.3
Lac2g1460 . 7 217 Antiporters AT3G05030 65.9 1.3e-73 275.0
Lac6g0673 . 99 648 Antiporters AT1G15460 66.7 9.2e-216 747.3
Lac11g0702 . 102 636 Antiporters AT1G15460 67.2 2.5e-213 739.2
Lac11g0438 . 102 645 Antiporters AT1G15460 59.6 6.6e-182 634.8
Lac10g0452 . 102 644 Antiporters AT1G15460 57.2 1.4e-176 617.1
Lac11g0438 . 3 709 Antiporters AT3G06450 70.4 1.5e-295 1012.7
Lac10g0452 . 3 683 Antiporters AT3G06450 69.2 6.7e-280 960.7
Lac6g0673 . 3 638 Antiporters AT3G06450 56.4 2.3e-216 749.6
Lac11g0702 . 6 618 Antiporters AT3G06450 53.2 1.4e-197 687.2
Lac11g0438 . 1 715 Antiporters AT2G47160 80.4 0.0e+00 1174.1
Lac10g0452 . 1 670 Antiporters AT2G47160 74.1 1.6e-302 1035.8
Lac6g0673 . 4 638 Antiporters AT2G47160 58.0 1.6e-217 753.4
Lac11g0702 . 1 618 Antiporters AT2G47160 52.7 9.2e-197 684.5
Lac11g0702 . 1 634 Antiporters AT1G74810 67.4 4.2e-260 894.8
Lac6g0673 . 4 663 Antiporters AT1G74810 66.2 3.7e-256 881.7
Lac11g0438 . 1 645 Antiporters AT1G74810 59.4 6.1e-219 758.1
Lac10g0452 . 7 644 Antiporters AT1G74810 58.9 1.4e-218 756.9
Lac11g0438 . 1 708 Antiporters AT3G62270 82.4 0.0e+00 1172.5
Lac10g0452 . 1 694 Antiporters AT3G62270 75.7 1.1e-308 1056.2
Lac6g0673 . 4 638 Antiporters AT3G62270 59.9 5.5e-223 771.5
Lac11g0702 . 1 618 Antiporters AT3G62270 55.0 4.1e-202 702.2
Lac6g0673 . 4 654 Antiporters AT4G32510 68.0 5.8e-262 901.0
Lac11g0702 . 1 635 Antiporters AT4G32510 62.8 9.6e-241 830.5
Lac11g0438 . 1 646 Antiporters AT4G32510 55.6 6.7e-210 728.0
Lac10g0452 . 1 650 Antiporters AT4G32510 54.6 4.8e-208 721.8
Lac6g0673 . 4 646 Antiporters AT5G25430 71.0 1.6e-264 909.4
Lac11g0702 . 2 626 Antiporters AT5G25430 62.5 6.4e-229 791.2
Lac11g0438 . 7 645 Antiporters AT5G25430 56.4 8.2e-208 721.1
Lac10g0452 . 7 656 Antiporters AT5G25430 54.5 4.2e-204 708.8
Lac8g2191 . 12 1138 Antiporters AT2G01980 65.6 0.0e+00 1378.2
Lac8g2191 . 11 738 Antiporters AT1G14660 65.9 1.6e-273 939.5
Lac6g0195 . 57 567 Antiporters AT5G11800 85.4 1.2e-234 810.1
Lac3g1009 . 19 587 Antiporters AT5G11800 75.6 7.7e-226 780.8
Lac5g2858 . 57 578 Antiporters AT5G11800 68.6 3.8e-188 655.6
Lac5g2858 . 31 576 Antiporters AT5G51710 82.8 6.8e-248 854.0
Lac6g0195 . 50 555 Antiporters AT5G51710 71.3 6.5e-190 661.4
Lac3g1009 . 51 560 Antiporters AT5G51710 68.8 1.7e-182 636.7
Lac3g1009 . 39 582 Antiporters AT2G19600 80.4 1.7e-228 789.6
Lac6g0195 . 3 558 Antiporters AT2G19600 77.9 1.8e-227 786.2
Lac5g2858 . 32 563 Antiporters AT2G19600 67.7 5.2e-182 635.2
Lac5g2567 . 150 565 Antiporters AT1G49810 78.2 7.7e-180 627.5
Lac5g2567 . 1 583 Antiporters AT3G19490 75.5 1.3e-241 833.2
Lac9g2823 . 83 567 Antiporters AT5G12860 89.9 8.5e-251 863.6
Lac5g2686 . 3 492 Antiporters AT5G64280 67.0 8.8e-192 667.5
Lac5g2686 . 21 492 Antiporters AT5G64290 78.6 6.6e-211 731.1
Lac12g0737 . 3 379 Antiporters AT4G28390 82.5 1.2e-176 616.7
Lac4g2661 . 444 830 Antiporters AT4G28390 75.1 3.4e-158 555.4
Lac10g0186 . 5 306 Antiporters AT4G28390 64.4 1.5e-110 397.1
Lac4g2661 . 442 831 Antiporters AT3G08580 77.9 4.3e-169 591.7
Lac12g0737 . 1 378 Antiporters AT3G08580 72.3 3.4e-150 528.9
Lac10g0186 . 7 306 Antiporters AT3G08580 58.5 1.5e-97 354.0
Lac4g2661 . 442 831 Antiporters AT5G13490 82.2 3.2e-180 628.6
Lac12g0737 . 8 378 Antiporters AT5G13490 79.3 6.7e-162 567.8
Lac10g0186 . 8 306 Antiporters AT5G13490 62.3 1.0e-106 384.4
Lac10g0186 . 4 301 Antiporters AT5G17400 82.6 9.4e-143 503.8
Lac12g0737 . 79 368 Antiporters AT5G17400 64.1 1.0e-109 394.0
Lac4g2661 . 531 822 Antiporters AT5G17400 63.7 2.6e-108 389.4
Lac3g2643 . 3 611 Antiporters AT1G08960 60.2 1.4e-181 633.6
Lac7g2177 . 41 563 Antiporters AT5G17850 54.2 6.5e-150 528.5
Lac11g0372 . 13 537 Antiporters AT2G47600 71.2 3.6e-214 741.9
Lac4g2872 . 1 297 Antiporters AT1G79900 70.1 1.1e-119 427.2
Lac11g0737 . 1 300 Antiporters AT1G79900 67.4 3.6e-115 412.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002141 0 2 1 0 1 2 4 2 2 2 2 2 4 2 2 3 2 3 4 2 2 2 2 2 2 2 2 4 3 1 64