Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0744 | ATGGGCGCCGACATGTCCAACAATCGCCAGCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCCGCTCTCTCTCTCACCCTCGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGGGATGTCGAGATGGAGGAGGTGGACGACGGCAGCGGAGGAGCGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTCGGGGCCGGTGAGGTCGAGATCGGACGACGATTTCGACGGCGGAGGAGTGCATGAGGAAAATGAAGATCATGGGGATCATGGATGTCATGTAAAGAGAAGGAAGAAATATCATCGGCATACTGCCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAGTCACCACACCCGGATGAGAAGCAAAGGCAGCAGCTCAGTAAGCGATTGGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAATACATTGCTAAAAGCTGAAATGGAGAAACTTAGAGAAGAAAATAAAGCCATGAGAGAGATTACCAAGAATAAAGCTGGTTGTTCAAACTGTGGCACTGTCGATGCGGGGGAAGACCACGCCACATTGACAACCACGGAGCAATTGCGTATTAAGAATGCCAAGCTTAAAGCTGAGGTTGAAAAACTGAGAGCGGCGCTAGGAAAACACCCTCAAGCTGCAGCCTCGCCTTCATACTCATCCGGAAACGACCAAGAGACAAACCGAAGCTGCTTAGATTTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTTGAAGAGCTCAAAACAATGGCCGCCGCCGCCGAGCCCCTCTGGGTCCGTAGTGTCGAGACCGGTCGAGAGATTTTAAACTACGACGAGTACTTGAAGACATTCCATCTCAAGAATTCCAACAATTGTTGGCTCAAGAGACACATCGAGGCCTCTCGAGAGACGGCCGTCGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCCACAGTTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTCACACCATTGGTGCCCACTAGAGAAATGTATTTCATACGCCATTGTAAGCAGCTCGACGCTGAACAGTGGGCGATTGTCGATGTTTCGATCGAGAACGTTGAAGATAATAGTATCGACGCATCGTTGGTGAAATACAGAAAACGTCCTTCTGGTTGCATAATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAGAAAGAAAGTTCACAACTTGTACCGCAGCATTGTCAACAATGGCACTGCCTTCGGAGCAAGACATTGGATGGCCACACTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCCACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACATTGGCAGGAAGAAAAAGCACATTAAAATTGGCACAGAGAATGACTTCAAGCTTCTCCCAAGCAGTTGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTAAGTGACCCTGGAGAACCCATTGGAATTATTTTATGTGCAGTTTCTTCCCTATGGCTGCCTGTCTCTCCTCATCTTCTCTTCGATTTCTTGAGAGACGAAGCTCGCAGACACGAGTGGGATGCTATGTTTGGTGGAGATAAAGCTCAGACGATTGCAAATTTGGCTAAAGGACAGGATCGAGGCAACTCGGTTACCATTCAAACAATAGGATCAAAAGAGAGCAGCAGCAGCATGTGGATCCTTCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTCTACTCCGGAGTAGCCGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCGCAATCCTCCCCTCAGGCTTTTCAATTCTCCCCGACGGCGCTGAGTCAAGACCCCTACTCATCACTCGCCGGAAAGACCACAAATCCGCCGACACCCACGGCGGTGCTCTGGTGACCGCCGCCGTCCAAATCCTGACCGACGCGTCTCCCTCTGCAAAACCCACGGTGGAGTCCGTCGAGTACGTGAAAAGCATCGTTTCATGTACGATCAAAAATATCAGAAGCAGCATGTGCTGTGAGGATGATTGA | 2283 | 49.36 | MGADMSNNRQLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDAAEVSSENSGPVRSRSDDDFDGGGVHEENEDHGDHGCHVKRRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREITKNKAGCSNCGTVDAGEDHATLTTTEQLRIKNAKLKAEVEKLRAALGKHPQAAASPSYSSGNDQETNRSCLDFYTGIFGLEKSRIMEKVHQALEELKTMAAAAEPLWVRSVETGREILNYDEYLKTFHLKNSNNCWLKRHIEASRETAVVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEVANWNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNSIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECERKKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMTSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGIILCAVSSLWLPVSPHLLFDFLRDEARRHEWDAMFGGDKAQTIANLAKGQDRGNSVTIQTIGSKESSSSMWILQDSSTNSSESMVVYSGVAVSGMQSVMTGCDSGSLAILPSGFSILPDGAESRPLLITRRKDHKSADTHGGALVTAAVQILTDASPSAKPTVESVEYVKSIVSCTIKNIRSSMCCEDD | 760 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 7786545 | 7794334 | - | Lag0031382.1 | Lac11g0744 | 586602 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0744 | 760 | SMART | HOX_1 | 99 | 161 | IPR001356 | GO:0003677(InterPro) | |
Lac11g0744 | 760 | Pfam | START domain | 274 | 495 | IPR002913 | GO:0008289(InterPro) | |
Lac11g0744 | 760 | Pfam | Homeodomain | 100 | 155 | IPR001356 | GO:0003677(InterPro) | |
Lac11g0744 | 760 | MobiDBLite | consensus disorder prediction | 34 | 106 | - | - | |
Lac11g0744 | 760 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 89 | 757 | IPR042160 | - | |
Lac11g0744 | 760 | ProSiteProfiles | START domain profile. | 261 | 498 | IPR002913 | GO:0008289(InterPro) | |
Lac11g0744 | 760 | SMART | START_1 | 270 | 495 | IPR002913 | GO:0008289(InterPro) | |
Lac11g0744 | 760 | MobiDBLite | consensus disorder prediction | 34 | 62 | - | - | |
Lac11g0744 | 760 | Gene3D | - | 86 | 171 | - | - | |
Lac11g0744 | 760 | SUPERFAMILY | Bet v1-like | 518 | 692 | - | - | |
Lac11g0744 | 760 | CDD | START_ArGLABRA2_like | 265 | 494 | - | - | |
Lac11g0744 | 760 | FunFam | Homeobox-leucine zipper protein HDG1 | 84 | 173 | - | - | |
Lac11g0744 | 760 | SUPERFAMILY | Homeodomain-like | 86 | 158 | IPR009057 | - | |
Lac11g0744 | 760 | CDD | homeodomain | 100 | 155 | IPR001356 | GO:0003677(InterPro) | |
Lac11g0744 | 760 | ProSitePatterns | 'Homeobox' domain signature. | 132 | 155 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac11g0744 | 760 | ProSiteProfiles | 'Homeobox' domain profile. | 97 | 157 | IPR001356 | GO:0003677(InterPro) | |
Lac11g0744 | 760 | Coils | Coil | 208 | 228 | - | - | |
Lac11g0744 | 760 | Gene3D | - | 270 | 495 | IPR023393 | - | |
Lac11g0744 | 760 | MobiDBLite | consensus disorder prediction | 70 | 95 | - | - | |
Lac11g0744 | 760 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 270 | 494 | - | - | |
Lac11g0744 | 760 | Coils | Coil | 156 | 186 | - | - | |
Lac11g0744 | 760 | SUPERFAMILY | Bet v1-like | 263 | 496 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0744 | Lac-Chr11:7786545 | Lac12g1799 | Lac-Chr12:34276663 | 2.70E-151 | dispersed | |
Lac8g2671 | Lac-Chr8:44187497 | Lac11g0744 | Lac-Chr11:7786545 | 6.80E-07 | dispersed | |
Lac11g0744 | Lac-Chr11:7786545 | Lac4g2887 | Lac-Chr4:47334342 | 1.20E-218 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22910 | PF01852 | START | 2.80E-54 | CL0209 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0744 | K09338 | - | csv:101221341 | 1274.61 |