Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0744 ATGGGCGCCGACATGTCCAACAATCGCCAGCTCGCTTTCACCAAAGACTTCTTCTCCTCTCCCGCTCTCTCTCTCACCCTCGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGGGATGTCGAGATGGAGGAGGTGGACGACGGCAGCGGAGGAGCGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAACTCGGGGCCGGTGAGGTCGAGATCGGACGACGATTTCGACGGCGGAGGAGTGCATGAGGAAAATGAAGATCATGGGGATCATGGATGTCATGTAAAGAGAAGGAAGAAATATCATCGGCATACTGCCGAGCAGATCAGAGAAATGGAGGCGCTATTTAAAGAGTCACCACACCCGGATGAGAAGCAAAGGCAGCAGCTCAGTAAGCGATTGGGACTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAATACATTGCTAAAAGCTGAAATGGAGAAACTTAGAGAAGAAAATAAAGCCATGAGAGAGATTACCAAGAATAAAGCTGGTTGTTCAAACTGTGGCACTGTCGATGCGGGGGAAGACCACGCCACATTGACAACCACGGAGCAATTGCGTATTAAGAATGCCAAGCTTAAAGCTGAGGTTGAAAAACTGAGAGCGGCGCTAGGAAAACACCCTCAAGCTGCAGCCTCGCCTTCATACTCATCCGGAAACGACCAAGAGACAAACCGAAGCTGCTTAGATTTTTACACTGGAATTTTTGGGCTTGAGAAGTCAAGGATCATGGAGAAGGTTCATCAAGCTCTTGAAGAGCTCAAAACAATGGCCGCCGCCGCCGAGCCCCTCTGGGTCCGTAGTGTCGAGACCGGTCGAGAGATTTTAAACTACGACGAGTACTTGAAGACATTCCATCTCAAGAATTCCAACAATTGTTGGCTCAAGAGACACATCGAGGCCTCTCGAGAGACGGCCGTCGTCTTCATGGAGCCCTCGAGGTTGGTTCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCGAAGGCAGCCACAGTTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTCACACCATTGGTGCCCACTAGAGAAATGTATTTCATACGCCATTGTAAGCAGCTCGACGCTGAACAGTGGGCGATTGTCGATGTTTCGATCGAGAACGTTGAAGATAATAGTATCGACGCATCGTTGGTGAAATACAGAAAACGTCCTTCTGGTTGCATAATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGTGAAAGAAAGAAAGTTCACAACTTGTACCGCAGCATTGTCAACAATGGCACTGCCTTCGGAGCAAGACATTGGATGGCCACACTCCAACTCCAATGCGAACGCCTTGCTTTCTTCATGGCCACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACATTGGCAGGAAGAAAAAGCACATTAAAATTGGCACAGAGAATGACTTCAAGCTTCTCCCAAGCAGTTGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTAAGTGACCCTGGAGAACCCATTGGAATTATTTTATGTGCAGTTTCTTCCCTATGGCTGCCTGTCTCTCCTCATCTTCTCTTCGATTTCTTGAGAGACGAAGCTCGCAGACACGAGTGGGATGCTATGTTTGGTGGAGATAAAGCTCAGACGATTGCAAATTTGGCTAAAGGACAGGATCGAGGCAACTCGGTTACCATTCAAACAATAGGATCAAAAGAGAGCAGCAGCAGCATGTGGATCCTTCAAGACAGCTCCACAAACTCGTCGGAATCCATGGTGGTCTACTCCGGAGTAGCCGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCGCAATCCTCCCCTCAGGCTTTTCAATTCTCCCCGACGGCGCTGAGTCAAGACCCCTACTCATCACTCGCCGGAAAGACCACAAATCCGCCGACACCCACGGCGGTGCTCTGGTGACCGCCGCCGTCCAAATCCTGACCGACGCGTCTCCCTCTGCAAAACCCACGGTGGAGTCCGTCGAGTACGTGAAAAGCATCGTTTCATGTACGATCAAAAATATCAGAAGCAGCATGTGCTGTGAGGATGATTGA 2283 49.36 MGADMSNNRQLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDAAEVSSENSGPVRSRSDDDFDGGGVHEENEDHGDHGCHVKRRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMREITKNKAGCSNCGTVDAGEDHATLTTTEQLRIKNAKLKAEVEKLRAALGKHPQAAASPSYSSGNDQETNRSCLDFYTGIFGLEKSRIMEKVHQALEELKTMAAAAEPLWVRSVETGREILNYDEYLKTFHLKNSNNCWLKRHIEASRETAVVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEVANWNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENVEDNSIDASLVKYRKRPSGCIIKDESNGHCKVTMVEHLECERKKVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMTSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGIILCAVSSLWLPVSPHLLFDFLRDEARRHEWDAMFGGDKAQTIANLAKGQDRGNSVTIQTIGSKESSSSMWILQDSSTNSSESMVVYSGVAVSGMQSVMTGCDSGSLAILPSGFSILPDGAESRPLLITRRKDHKSADTHGGALVTAAVQILTDASPSAKPTVESVEYVKSIVSCTIKNIRSSMCCEDD 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7786545 7794334 - Lag0031382.1 Lac11g0744 586602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0744 760 SMART HOX_1 99 161 IPR001356 GO:0003677(InterPro)
Lac11g0744 760 Pfam START domain 274 495 IPR002913 GO:0008289(InterPro)
Lac11g0744 760 Pfam Homeodomain 100 155 IPR001356 GO:0003677(InterPro)
Lac11g0744 760 MobiDBLite consensus disorder prediction 34 106 - -
Lac11g0744 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 757 IPR042160 -
Lac11g0744 760 ProSiteProfiles START domain profile. 261 498 IPR002913 GO:0008289(InterPro)
Lac11g0744 760 SMART START_1 270 495 IPR002913 GO:0008289(InterPro)
Lac11g0744 760 MobiDBLite consensus disorder prediction 34 62 - -
Lac11g0744 760 Gene3D - 86 171 - -
Lac11g0744 760 SUPERFAMILY Bet v1-like 518 692 - -
Lac11g0744 760 CDD START_ArGLABRA2_like 265 494 - -
Lac11g0744 760 FunFam Homeobox-leucine zipper protein HDG1 84 173 - -
Lac11g0744 760 SUPERFAMILY Homeodomain-like 86 158 IPR009057 -
Lac11g0744 760 CDD homeodomain 100 155 IPR001356 GO:0003677(InterPro)
Lac11g0744 760 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac11g0744 760 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677(InterPro)
Lac11g0744 760 Coils Coil 208 228 - -
Lac11g0744 760 Gene3D - 270 495 IPR023393 -
Lac11g0744 760 MobiDBLite consensus disorder prediction 70 95 - -
Lac11g0744 760 FunFam Homeobox-leucine zipper protein GLABRA 2 270 494 - -
Lac11g0744 760 Coils Coil 156 186 - -
Lac11g0744 760 SUPERFAMILY Bet v1-like 263 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0744 Lac-Chr11:7786545 Lac12g1799 Lac-Chr12:34276663 2.70E-151 dispersed
Lac8g2671 Lac-Chr8:44187497 Lac11g0744 Lac-Chr11:7786545 6.80E-07 dispersed
Lac11g0744 Lac-Chr11:7786545 Lac4g2887 Lac-Chr4:47334342 1.20E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22910 PF01852 START 2.80E-54 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0744 K09338 - csv:101221341 1274.61