Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0766 ATGGCGGAACCCAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGCGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAACTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTCAATTCCATGACGGCGTCGTTCTCGTCGTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTCCGGGGTTTTCCGATCAGAGTACGATTCCGGTCACCTTTGACGGCGGCGATTGA 582 54.81 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFPGFSDQSTIPVTFDGGD 193
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8045501 8046082 - Lag0031404.1 Lac11g0766 586624
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0766 193 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677(InterPro)
Lac11g0766 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 145 IPR051032 -
Lac11g0766 193 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 FunFam Ethylene-responsive transcription factor 2 24 85 - -
Lac11g0766 193 SMART rav1_2 25 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 MobiDBLite consensus disorder prediction 1 23 - -
Lac11g0766 193 Pfam AP2 domain 25 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 ProSiteProfiles AP2/ERF domain profile. 25 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 CDD AP2 24 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0766 193 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0766 Lac-Chr11:8045501 Lac4g2907 Lac-Chr4:47475878 2.50E-45 dispersed
Lac11g0766 Lac-Chr11:8045501 Lac3g0945 Lac-Chr3:7626221 8.20E-36 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22914 PF00847 AP2 1.70E-13 CL0081 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0766 K09286 - csv:101222354 316.235