Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0766 | ATGGCGGAACCCAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGCGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAACTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTCAATTCCATGACGGCGTCGTTCTCGTCGTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTCCGGGGTTTTCCGATCAGAGTACGATTCCGGTCACCTTTGACGGCGGCGATTGA | 582 | 54.81 | MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFPGFSDQSTIPVTFDGGD | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8045501 | 8046082 | - | Lag0031404.1 | Lac11g0766 | 586624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0766 | 193 | SUPERFAMILY | DNA-binding domain | 25 | 85 | IPR016177 | GO:0003677(InterPro) | |
Lac11g0766 | 193 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 9 | 145 | IPR051032 | - | |
Lac11g0766 | 193 | Gene3D | AP2/ERF domain | 25 | 85 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 24 | 85 | - | - | |
Lac11g0766 | 193 | SMART | rav1_2 | 25 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lac11g0766 | 193 | Pfam | AP2 domain | 25 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 25 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | CDD | AP2 | 24 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | PRINTS | Ethylene responsive element binding protein signature | 26 | 37 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g0766 | 193 | PRINTS | Ethylene responsive element binding protein signature | 48 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0766 | Lac-Chr11:8045501 | Lac4g2907 | Lac-Chr4:47475878 | 2.50E-45 | dispersed | |
Lac11g0766 | Lac-Chr11:8045501 | Lac3g0945 | Lac-Chr3:7626221 | 8.20E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22914 | PF00847 | AP2 | 1.70E-13 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0766 | K09286 | - | csv:101222354 | 316.235 |