Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0807 ATGTCATTCTTACGAGTCACTAAATGGAATTTATCCTTTAGTGGACTCACAGGGAAAATAGCTGAGGACATAGCAAATCTCACAATGCTAGAAACTCTGGATTTATCCAACAATAACTTAAGTGGACCAGTGCCTGAGTTTCTTGTTCAATTGCCATCATTGAGAGTCTTAAATTTAGAAAGAAACAACCTTTCCGGACTTATTCCTTCTCAACTCATTAAAAACTCTAATGATGGCCTTTTAAACTTAAGCTTCGGTGAGAATCCAAACTTATTCATCACAACTCTGCATGAAGAAAAGAAACGCAACATAGTTGTTCCTGTACTAGCATCAGTTTGTGGATTTGTTCTGCTTTTGTTCTTGATTTTAGGTGTTATCTTTTGGATCAAGATTAAACAAATAAGACAACAAGGTGCCGAGATTGGAAGAACAAAACAAAACCTCGACCAATCTCAACAATTGGGTGCAACCAAAAAATGCTATTCTTACTCAGATATATTGAGAATGACAAACAATTTTGAGCGACTTCTCGGAGAAGGTGGATTTGGAAGAGTTTACTATGGTCAAATCAACAACACTGAAGTAGCTGTGAAGATGCTTTCCCCTCAATCAGCTCAAGGGTATCAACAATTTCAAACAGAGGTTGACATTCTCATGAGGGTTCATCACAAAAATTTGACTGAACTTGTTGGATATTGTAATGAATCAACCAATAAAGGATTAATCTATGAATACATGGAAAGAGGGAACTTGAGATCTCTTATCTCAGGTGGCCGATCAATTAAGGTTTTGAGTTGGAAAGATAGGCTTCTTATAGCAATGGATGCAGCACATGGATTTGAGTACCTACATCATGGTATCAAACCGGCTATAATACATAGAGACGTAAAATCTACAAACATCTTATTGGACAATAATTTTCGAGCGAAAGTGTCTGATTTTGGGCTATCGAGAATTTTTCCTGTGGAAGGTGGCACCACTCATGTGACAGCCACCAATGTAGTCGGTACTCATGGCTACATCGACCCAGAGTACCACTTGTCGTTTAAATTAAATGAGAAAAGTGATGTTTATGGATTTGGAGTTATTCTTCTTGAAATCATAACTGGAAAACCAGCTTTGATAAAAACTAAAGACCAAGTAACTCATGTCTATCAATGGGTCAAGCCATTGCTTTCTCAAGGCGATATTCAATCTATCATCGACCCACAAATAGAAGAAGATTTGGATGTGAACTCTATCTGGAAAGCAGTTGACTTAGCAATGTGTTGTGCATCTTCAAAATCAATAGATAGACCCAATATGAGTCAAGTTTTGATCGAGTTGAAAGAATGTTTGACCATGGAATTGGCTCGTCATAATCATAGTCAATCTGAATATGTTGTTGCAGATTCCAGCATTATATTTGGACCATCGGCAAGGTAG 1425 37.33 MSFLRVTKWNLSFSGLTGKIAEDIANLTMLETLDLSNNNLSGPVPEFLVQLPSLRVLNLERNNLSGLIPSQLIKNSNDGLLNLSFGENPNLFITTLHEEKKRNIVVPVLASVCGFVLLLFLILGVIFWIKIKQIRQQGAEIGRTKQNLDQSQQLGATKKCYSYSDILRMTNNFERLLGEGGFGRVYYGQINNTEVAVKMLSPQSAQGYQQFQTEVDILMRVHHKNLTELVGYCNESTNKGLIYEYMERGNLRSLISGGRSIKVLSWKDRLLIAMDAAHGFEYLHHGIKPAIIHRDVKSTNILLDNNFRAKVSDFGLSRIFPVEGGTTHVTATNVVGTHGYIDPEYHLSFKLNEKSDVYGFGVILLEIITGKPALIKTKDQVTHVYQWVKPLLSQGDIQSIIDPQIEEDLDVNSIWKAVDLAMCCASSKSIDRPNMSQVLIELKECLTMELARHNHSQSEYVVADSSIIFGPSAR 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8594433 8597891 + Lag0031445.1 Lac11g0807 586665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0807 474 CDD STKc_IRAK 177 444 - -
Lac11g0807 474 PRINTS Leucine-rich repeat signature 30 43 - -
Lac11g0807 474 PRINTS Leucine-rich repeat signature 51 64 - -
Lac11g0807 474 FunFam Leucine-rich repeat receptor-like protein kinase 147 245 - -
Lac11g0807 474 SUPERFAMILY Protein kinase-like (PK-like) 152 442 IPR011009 -
Lac11g0807 474 ProSiteProfiles Protein kinase domain profile. 171 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0807 474 Pfam Protein tyrosine and serine/threonine kinase 173 385 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0807 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0807 474 SUPERFAMILY L domain-like 9 85 - -
Lac11g0807 474 Gene3D Ribonuclease Inhibitor 2 82 IPR032675 -
Lac11g0807 474 SMART serkin_6 171 446 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0807 474 Pfam Leucine rich repeat 25 64 IPR001611 GO:0005515(InterPro)
Lac11g0807 474 ProSitePatterns Protein kinases ATP-binding region signature. 177 198 IPR017441 GO:0005524(InterPro)
Lac11g0807 474 Gene3D Transferase(Phosphotransferase) domain 1 246 467 - -
Lac11g0807 474 Gene3D Phosphorylase Kinase; domain 1 143 245 - -
Lac11g0807 474 PANTHER OS07G0107800 PROTEIN-RELATED 5 450 - -
Lac11g0807 474 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 246 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0807 Lac-Chr11:8594433 Lac11g0810 Lac-Chr11:8617789 7.80E-213 dispersed
Lac11g0805 Lac-Chr11:8528748 Lac11g0807 Lac-Chr11:8594433 3.60E-214 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85741 PF07714 PK_Tyr_Ser-Thr 3.50E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0807 - - - 0.0