Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0822 ATGGCCACCATAAGAACAATCAAGAAAGGCGTTCTTGAAGAATTCAGAGTCGTCAACGAAGATTTGTCTTCCAAGGATGGCTCTGATCTCTTGTTGGGTTTCCTCCTAATCAGTCTGGATGAACATCTCTGGTCGGCCTCGACCTCGGCCTGGTCGGCTTCTGCCTGGTTAGCATCGGCCTTAGCCTACTCACTACTTAGCAAGCTTTCTTTCCCACAGACGACGCCAACTGTTGATTGTCAAATTTGGTCAGAGGAAACTCATCTGACCTTCACGTGCCACCAACGGAATTCGGAGGCGTTTCAGGACGAACCAAGCAGAACCGGGGCGGCCAAAGGCATCAGGGACCGAAAGGAGGCGATCGAGCTCGGCCCGCGCAAGCAGGCCGACCATATGGGTCGGGCCAAGTTGGCCCGGCCCTTTGCTACAGGTCCGATCATAGTGGAGCCTCGTTCACCAATAAATTCTGAGGTTGAACTTCATCCACACGAGCCATTACAGACACCAAGTCGTCAATTTTCCTACTCAGACGTCTTAAAAATGACTAATAACTTTGGTAGACTATTGGGTGAAGGTGGGTTTGGAAAGGTTTATTATGGTGTCATGAGTAACGACACTGAAGTGGCTGTCAAGATGCTATCTCCAAAGTCAGCTCAAGGCTATCGAGAATTTCAAGCTGAGGTCGATCTTCTTTTGAGAGTTCACCACAGAAACTTAACTAGCCTTGTTGGATATTGCAACGAAGGAGAGACAAAAATGGGACTTGTCTATGAATACATGGGCAAAGGAAACCTAGGATCACTTCTTTTAGGTGGAAGAGGACAAGTTTTAAGATGGGAAGACAGACTTCAAATAGCATTGGATTCAGCACAAGGATTGGAATATCTACATAATGGTTGTAGGCCACCAATTATCCATAGGGACATCAAATCAAGTAACATTCTATTGAACGAGTATTTACAAGCAAAACTTGCCGATTTTGGCCTATCAAGAGCTTTTCCTACGGATGGAGGTGCCACTCATGTGACAACGAAAGTGGTCGGAACTCCTGGCTACCTCGATCCAGAGTATTACACGTCGTACAAATTGACGGAGAAGAGTGATGTTTATAGCTTTGGAATCGTTATTCTAGAACTCATCACTGGAAGACCGGTGCTAGTGAAAACGAGTGAGAAAAGTCACATTATTCAGTGGGTCGATTCCAACATCAACCAAGGTGATATCTATTCCATAATTGACCCAAAAATAAAAGAAGATTGCAATACTAACTCTGTGTGGAAAGCAGTAGACATAGGAATGTCTTGCACTGCTCGTAACCCTATAAATAGACCAACAATGAGTCATGTTGTAAGCGAACTCAAAGAATGTCTGAACATTGAGTTAAATCAGAGAGGTCATCCAATGGACTCTGCAACCACTATCTCCTCAACATTCCATTCTGAGATTGGCCCTATGGCAAGGTAG 1464 45.08 MATIRTIKKGVLEEFRVVNEDLSSKDGSDLLLGFLLISLDEHLWSASTSAWSASAWLASALAYSLLSKLSFPQTTPTVDCQIWSEETHLTFTCHQRNSEAFQDEPSRTGAAKGIRDRKEAIELGPRKQADHMGRAKLARPFATGPIIVEPRSPINSEVELHPHEPLQTPSRQFSYSDVLKMTNNFGRLLGEGGFGKVYYGVMSNDTEVAVKMLSPKSAQGYREFQAEVDLLLRVHHRNLTSLVGYCNEGETKMGLVYEYMGKGNLGSLLLGGRGQVLRWEDRLQIALDSAQGLEYLHNGCRPPIIHRDIKSSNILLNEYLQAKLADFGLSRAFPTDGGATHVTTKVVGTPGYLDPEYYTSYKLTEKSDVYSFGIVILELITGRPVLVKTSEKSHIIQWVDSNINQGDIYSIIDPKIKEDCNTNSVWKAVDIGMSCTARNPINRPTMSHVVSELKECLNIELNQRGHPMDSATTISSTFHSEIGPMAR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8783096 8787740 + Lag0031460.1 Lac11g0822 586680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0822 487 ProSiteProfiles Protein kinase domain profile. 183 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0822 487 FunFam Leucine-rich repeat receptor-like protein kinase 161 259 - -
Lac11g0822 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0822 487 PANTHER OS07G0107800 PROTEIN-RELATED 154 460 - -
Lac11g0822 487 SMART serkin_6 183 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0822 487 Pfam Protein tyrosine and serine/threonine kinase 185 453 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0822 487 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 260 465 - -
Lac11g0822 487 Gene3D Phosphorylase Kinase; domain 1 165 259 - -
Lac11g0822 487 CDD STKc_IRAK 189 455 - -
Lac11g0822 487 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524(InterPro)
Lac11g0822 487 SUPERFAMILY Protein kinase-like (PK-like) 160 453 IPR011009 -
Lac11g0822 487 Gene3D Transferase(Phosphotransferase) domain 1 260 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0822 Lac-Chr11:8783096 Lac4g2949 Lac-Chr4:47826956 1.50E-105 dispersed
Lac4g1923 Lac-Chr4:38658513 Lac11g0822 Lac-Chr11:8783096 3.30E-12 dispersed
Lac9g0122 Lac-Chr9:1872709 Lac11g0822 Lac-Chr11:8783096 4.90E-08 dispersed
Lac11g0822 Lac-Chr11:8783096 Lac11g0825 Lac-Chr11:8823229 2.10E-152 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85747 PF07714 PK_Tyr_Ser-Thr 4.10E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0822 - - - 0.0