Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g0830 | ATGGATGATTTGCTTTGGAATGGCTCATGGAGCAACGGCGAAGACGATGGTCGTTTCGAAGAAAGCTTATTCTCCTCGGACGACCCGAGTCGTTGTTCGAGCCCACCATTACGAGAGCTTCAAACAGTTGCAAGAATATTGGGGTTGCCGGAGATCGAAACTCCGGTGCCGGAGACGAGGGCAGTGGAATTGGCTATGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGAGTTTTGTTGGAAGAGCTTGAAAATGACAAAGGAATTGCACCAAAGGGTGGATCTTGGGACATTTTTGAGAACCAAAAACCAAAACAACAAAATCCCATAACAAAAAAACAACCAAGCTTTGCCAAAAATAATGATCACTTCCAACACTCTACAACTTCGTCTCCATCACCATCGTCTTCGAACAACGACGAGTCTGAGCCTGTTGATCGGGAGGTCATGTCACGAATGAAGGAATTGATATATCACACAGCGGTGTTTAGGCCGGTGAACTTGGGGTTGGAGACGGTGGAGAAGAAGACGAGGAGGAACGTGAAGACGTCGAAGGAGCCACAAACGGTGGCAGCGAGAAAACGAAGGGAGAAGATAAGTGAAAAAATTAGGGTTTTGCAGAGGTTGGTTCCTGGTGGGAACAAAATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGCTACCTCAAGTTTCTTAGGGCACAAATCAAAGCACTAGAGGGTTTAAGCTACAAAGTTGGCAATGTTGATTATTGTCTCTCAACTTGCACCTCTTTTTCTTTCAACTCCACTGCATTTCCCACAAATAATGCTTATTTTCCTCTCTAA | 834 | 46.64 | MDDLLWNGSWSNGEDDGRFEESLFSSDDPSRCSSPPLRELQTVARILGLPEIETPVPETRAVELAMDPKSWPAGASSGGVLLEELENDKGIAPKGGSWDIFENQKPKQQNPITKKQPSFAKNNDHFQHSTTSSPSPSSSNNDESEPVDREVMSRMKELIYHTAVFRPVNLGLETVEKKTRRNVKTSKEPQTVAARKRREKISEKIRVLQRLVPGGNKMDTASMLDEAASYLKFLRAQIKALEGLSYKVGNVDYCLSTCTSFSFNSTAFPTNNAYFPL | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8859741 | 8861491 | - | Lag0031468.1 | Lac11g0830 | 586688 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g0830 | 277 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 187 | 244 | IPR036638 | GO:0046983(InterPro) | |
| Lac11g0830 | 277 | Pfam | Helix-loop-helix DNA-binding domain | 193 | 235 | IPR011598 | GO:0046983(InterPro) | |
| Lac11g0830 | 277 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lac11g0830 | 277 | Gene3D | - | 175 | 249 | IPR036638 | GO:0046983(InterPro) | |
| Lac11g0830 | 277 | MobiDBLite | consensus disorder prediction | 93 | 149 | - | - | |
| Lac11g0830 | 277 | SMART | finulus | 191 | 240 | IPR011598 | GO:0046983(InterPro) | |
| Lac11g0830 | 277 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 185 | 234 | IPR011598 | GO:0046983(InterPro) | |
| Lac11g0830 | 277 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 110 | 272 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Lac11g0830 | 277 | CDD | bHLH_AtIND_like | 186 | 242 | - | - | |
| Lac11g0830 | 277 | MobiDBLite | consensus disorder prediction | 102 | 142 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0830 | Lac-Chr11:8859741 | Lac1g2390 | Lac-Chr1:45228306 | 1.60E-24 | dispersed | |
| Lac11g0830 | Lac-Chr11:8859741 | Lac4g2957 | Lac-Chr4:47881544 | 3.00E-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 22917 | PF00010 | HLH | 4.40E-06 | No_clan | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g0830 | - | - | - | 0.0 |