Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0830 ATGGATGATTTGCTTTGGAATGGCTCATGGAGCAACGGCGAAGACGATGGTCGTTTCGAAGAAAGCTTATTCTCCTCGGACGACCCGAGTCGTTGTTCGAGCCCACCATTACGAGAGCTTCAAACAGTTGCAAGAATATTGGGGTTGCCGGAGATCGAAACTCCGGTGCCGGAGACGAGGGCAGTGGAATTGGCTATGGATCCCAAGTCATGGCCGGCGGGAGCTAGCTCCGGTGGAGTTTTGTTGGAAGAGCTTGAAAATGACAAAGGAATTGCACCAAAGGGTGGATCTTGGGACATTTTTGAGAACCAAAAACCAAAACAACAAAATCCCATAACAAAAAAACAACCAAGCTTTGCCAAAAATAATGATCACTTCCAACACTCTACAACTTCGTCTCCATCACCATCGTCTTCGAACAACGACGAGTCTGAGCCTGTTGATCGGGAGGTCATGTCACGAATGAAGGAATTGATATATCACACAGCGGTGTTTAGGCCGGTGAACTTGGGGTTGGAGACGGTGGAGAAGAAGACGAGGAGGAACGTGAAGACGTCGAAGGAGCCACAAACGGTGGCAGCGAGAAAACGAAGGGAGAAGATAAGTGAAAAAATTAGGGTTTTGCAGAGGTTGGTTCCTGGTGGGAACAAAATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGCTACCTCAAGTTTCTTAGGGCACAAATCAAAGCACTAGAGGGTTTAAGCTACAAAGTTGGCAATGTTGATTATTGTCTCTCAACTTGCACCTCTTTTTCTTTCAACTCCACTGCATTTCCCACAAATAATGCTTATTTTCCTCTCTAA 834 46.64 MDDLLWNGSWSNGEDDGRFEESLFSSDDPSRCSSPPLRELQTVARILGLPEIETPVPETRAVELAMDPKSWPAGASSGGVLLEELENDKGIAPKGGSWDIFENQKPKQQNPITKKQPSFAKNNDHFQHSTTSSPSPSSSNNDESEPVDREVMSRMKELIYHTAVFRPVNLGLETVEKKTRRNVKTSKEPQTVAARKRREKISEKIRVLQRLVPGGNKMDTASMLDEAASYLKFLRAQIKALEGLSYKVGNVDYCLSTCTSFSFNSTAFPTNNAYFPL 277
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8859741 8861491 - Lag0031468.1 Lac11g0830 586688
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0830 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 187 244 IPR036638 GO:0046983(InterPro)
Lac11g0830 277 Pfam Helix-loop-helix DNA-binding domain 193 235 IPR011598 GO:0046983(InterPro)
Lac11g0830 277 MobiDBLite consensus disorder prediction 1 36 - -
Lac11g0830 277 Gene3D - 175 249 IPR036638 GO:0046983(InterPro)
Lac11g0830 277 MobiDBLite consensus disorder prediction 93 149 - -
Lac11g0830 277 SMART finulus 191 240 IPR011598 GO:0046983(InterPro)
Lac11g0830 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983(InterPro)
Lac11g0830 277 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 110 272 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0830 277 CDD bHLH_AtIND_like 186 242 - -
Lac11g0830 277 MobiDBLite consensus disorder prediction 102 142 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0830 Lac-Chr11:8859741 Lac1g2390 Lac-Chr1:45228306 1.60E-24 dispersed
Lac11g0830 Lac-Chr11:8859741 Lac4g2957 Lac-Chr4:47881544 3.00E-39 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22917 PF00010 HLH 4.40E-06 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0830 - - - 0.0