Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0857 ATGTCGAACGCCGAAGGTGACAAAAAGAAGAAGAATATCGCCATAGTAAGCGTCTCTTCTCTGATCCTCGTTGCAATGGTGGTCGCCGTTACTGTCGGCGTCAACAGCTCACCCTACGGTGACGATCACGGTGAGGGTCATGGTGACGGTCACGGTGACGGAGGTGCCGAGATTAAGACATCGACGAAAGCAATTCAATCCATTTGTCGACCAACGGATTACAAAGAAACCTGCGAGCAGAGCCTGATGGCCGAAGCCAGTAACACGACGGACCCGAAAGAGCTCGCGAAAGCCGGCTTCAAAGTCGCCGTCGAATATATAAACACGGCGATTAGAAATTCCACCACACTCAAAGAGCTGGCCAAGGAACCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTCTGGAATACGCCATCGACGATTTAACCCAATCTTTCGAAAGAATCGGCACCTTCGAAATGTCGAAACTCGACCAGTTCGTCAACGATTTGAAGATCTGGCTTAGTGGGGCCCTCACGTACGAGCAGACTTGTTTGGACGGATTCGAAAACACGACCGGTGATGCCGGTCAGAAAATGCAGCAGTTTTTGAAGTCCGCTCAGGAAATGACGAGTAACGGTCTTGCGATCGTAACTGAATTGTCCACTATTATGGGATCACTTAATCAAATGCCGGGAGCGACGCCGGGAGCGACGGGACGACGGCTGTTGGACGAGGAAATGCCGTCGTGGGTGAGCGAAGGAAAGAGGCGGCTGATGCAGGCGGGACCGGGGGGGCTGAAGCCGGACGTGGTGGTGGCTCAAGATGGAAGTGGAAAATACAAGACGATCAGCGCGGCTTTGGTTGATGTGCCGAAGAAGAGTAATAAGACATTTGTGATTTATGTGAAGGCTGGAATTTATAAGGAAATCGTTGTTGTTCCTAAGGATGTGACTCATCTTACGATGTACGGCGATGGCCCAACCAAGACTGTCGTCACTGGTAGTCTCAACTTTATCGATGGCATTCAAACATTCAAGACCGCAACTTTCTCTACGATCGGAACTGATTTCTTCGCTAAAGACATGGGATTCGTGAACAGTGCTGGAGCTGCAAAGCACCAAGCCGTGGCGTTACGAGTCCAATCCGATAGAGCGATCTTTTACAACTGCCAAATGGATGGGTATCAAGATACTCTCTACGCCCACGCCCATCGCCAGTTCTACCGTGACTGTTCGATCAGTGGCACCATCGACTTCGTCTTCGGCAACGCGGCCGCCGTCTTCCAGAACTGCAAACTAATCGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCAAGGCCGGCTCAACCGCCGCGAACCGACCGCCCTAGTGTTCCAAGGGTGCCACTTCATGGGCGATCCGGCTTACTTGCCATTCAAGGCCGTCAACAAGGCTTACTTGGGGCGACCCTGGAAGGAATATTCACGAACCCTCATTATCGGGTCTCAAATCGACGATTTGATCCAGCCCGAGGGATGGTTGCCTTGGGGTGGCAATTTTGGGCTGAACACGCTGTTCTACGCGGAGGTTCAGAACAAGGGACCAGGGGCCGATCTTAGCAAGAGGGTGAAGTGGCGAGGAATTAAAACTATTACGCCAGATCACGCCGCTAAATTCACTCCCAGGGTATTTATCGACGGCGATGCTTGGATTAAGCCCAAGGGAATTCCGTATGCTTCTGGAATGATGTAA 1731 51.7 MSNAEGDKKKKNIAIVSVSSLILVAMVVAVTVGVNSSPYGDDHGEGHGDGHGDGGAEIKTSTKAIQSICRPTDYKETCEQSLMAEASNTTDPKELAKAGFKVAVEYINTAIRNSTTLKELAKEPRTNQALQNCRELLEYAIDDLTQSFERIGTFEMSKLDQFVNDLKIWLSGALTYEQTCLDGFENTTGDAGQKMQQFLKSAQEMTSNGLAIVTELSTIMGSLNQMPGATPGATGRRLLDEEMPSWVSEGKRRLMQAGPGGLKPDVVVAQDGSGKYKTISAALVDVPKKSNKTFVIYVKAGIYKEIVVVPKDVTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSTIGTDFFAKDMGFVNSAGAAKHQAVALRVQSDRAIFYNCQMDGYQDTLYAHAHRQFYRDCSISGTIDFVFGNAAAVFQNCKLIVRKPMDNQQCIVTAQGRLNRREPTALVFQGCHFMGDPAYLPFKAVNKAYLGRPWKEYSRTLIIGSQIDDLIQPEGWLPWGGNFGLNTLFYAEVQNKGPGADLSKRVKWRGIKTITPDHAAKFTPRVFIDGDAWIKPKGIPYASGMM 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9235100 9236913 - Lag0031495.1 Lac11g0857 586715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0857 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 217 IPR035513 -
Lac11g0857 576 NCBIfam pectinesterase inhibitor domain 60 216 IPR006501 GO:0004857(InterPro)
Lac11g0857 576 Pfam Pectinesterase 265 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac11g0857 576 FunFam Pectinesterase 61 217 - -
Lac11g0857 576 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Lac11g0857 576 PANTHER PECTINESTERASE 12 566 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac11g0857 576 Gene3D - 260 575 IPR012334 -
Lac11g0857 576 CDD PMEI-like_3 67 218 - -
Lac11g0857 576 Pfam Plant invertase/pectin methylesterase inhibitor 63 212 IPR006501 GO:0004857(InterPro)
Lac11g0857 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 216 IPR035513 -
Lac11g0857 576 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Lac11g0857 576 SMART PMEI_2 60 212 IPR006501 GO:0004857(InterPro)
Lac11g0857 576 FunFam Pectinesterase 260 575 - -
Lac11g0857 576 SUPERFAMILY Pectin lyase-like 263 573 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0857 Lac-Chr11:9235100 Lac7g0905 Lac-Chr7:7568420 1.60E-196 dispersed
Lac11g0857 Lac-Chr11:9235100 Lac11g0858 Lac-Chr11:9241488 4.90E-286 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0857 K01051 - csv:101221958 932.169