Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0858 ATGTCGTCGAACGGATTTGCCAATGGCGAAGGTGACCAAAAGAAGAAAAAGATGGTCATAATAAGCGTCTCTTCTCTATTCCTCGTGGCAATGGTCGTCGCCGTTACTGTCGGCGTTAACAACACACCCCATGTAGGGAACACCGATGACGGCGGAGCCGCCGAGATTTCCACATCCACGAAAGCGATCCAAGCCATTTGTCAACCAACAGATTACAAAGAAACCTGCGAGAAGGGCCTCATGGCCGAAGCCGGTGACACGACGGACCCGAAGGAGCTCGTAAAAGCTGGCTTCAAAGTCGCCACCGAATATATCAACACGGCGATTAAAAATTCCACCACTCTCCAGGAGCTGGCCAAAGATCCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTCTAGAATACGCCATCGACGATTTAACCAAATCTTTCGAAAGAATCGGCACCTTCGAAATGACGAAACTCGACGAGTTCACCAACGATTTGAAGATCTGGCTGAGTGGGGCCCTCACCTACGAGCAGACTTGTTTGGACGGATTCGAAAACACAACCGGTGATGCCGGTGAGAAAATGCAGAAGTTTTTGAAGTCCGCTCAGCAAATGACCACTAACGGCCTTGCGATCGTAACTGAATTGTCTTCTATTATGGCGTCAATGATGCCGGGAATGACGGGTTTTGGACGGCGGCTGTTGGACGAGGGAGTGCCGTCGTGGGTGAGCGATGGAAAGAGGCGGCTGATGCAGGCGGGACCGGGGGGGCTGAAGCCGGACGTGGTGGTGGCTCAAGATGGAAGTGGAAAATACAAGACGATCAACGCGGCTTTGGTTGATGTGCCGAAGAAGAGTAATAAGACATTTGTGATTTATGTGAAGGCTGGAATTTATAAGGAAATCGTTGTTGTTCCTAAGGCTTTGACTCATGTGACAATGTACGGCGATGGCCCAACCAAGACTGTCGTCACTGGTAGTTTGAACTTTGTCGATGGCATTCAAACTTTCAAGACCGCAACCTTCTCTGTGGTGGGAACTGATTTCTTCGCGAAAGACATGGGATTCGTGAACAGTGCAGGAGCGGCGAAGCACCAAGCCGTAGCGTTACGAGTCCAATCCGACCGATCGATCTTCTACAACTGTCAAATGGATGGGTATCAAGACACTCTCTACGCCCATGCCCATCGCCAGTTCTACCGTGACTGTTCGATCAGTGGCACCATTGACTTCGTCTTCGGCAACTCCGCCGCCATCTTCCAGAACTGCAAACTAATCGTCCGAAAGCCAATGGATAACCAACAATGCATCGTGACGGCTCAAGGGCGGATGAACCGCCGCGAACCGACCGCCCTAGTGTTCCAAAACTGCCACTTCATGGGCGACCCGGCTTACTTGCCATTCAAGGCCGTCAACAAGGCTTATTTGGGGAGACCTTGGAAGGCATATTCACGAACCCTCATTATGGGTTCTCAAATTGACGATTTGATCCAGCCCGAGGGATGGGTGCCGTGGGGTGGCGATTTTGGGCTGACCACATTGTTCTATGCGGAGGTTCAGAACAAGGGACCAGGGGCCGATCTGAGCAAGAGGGTGAAGTGGCGAGGAATTAAAACTATTACGCCAGATCACGCCGCTAAATTCACTCCCAGGGTTTTTATCGACGGCGATGCTTGGATTAAAAACAAGGGAATTCCGTATGCTTCTGGAATGATGTAA 1713 51.02 MSSNGFANGEGDQKKKKMVIISVSSLFLVAMVVAVTVGVNNTPHVGNTDDGGAAEISTSTKAIQAICQPTDYKETCEKGLMAEAGDTTDPKELVKAGFKVATEYINTAIKNSTTLQELAKDPRTNQALQNCRELLEYAIDDLTKSFERIGTFEMTKLDEFTNDLKIWLSGALTYEQTCLDGFENTTGDAGEKMQKFLKSAQQMTTNGLAIVTELSSIMASMMPGMTGFGRRLLDEGVPSWVSDGKRRLMQAGPGGLKPDVVVAQDGSGKYKTINAALVDVPKKSNKTFVIYVKAGIYKEIVVVPKALTHVTMYGDGPTKTVVTGSLNFVDGIQTFKTATFSVVGTDFFAKDMGFVNSAGAAKHQAVALRVQSDRSIFYNCQMDGYQDTLYAHAHRQFYRDCSISGTIDFVFGNSAAIFQNCKLIVRKPMDNQQCIVTAQGRMNRREPTALVFQNCHFMGDPAYLPFKAVNKAYLGRPWKAYSRTLIMGSQIDDLIQPEGWVPWGGDFGLTTLFYAEVQNKGPGADLSKRVKWRGIKTITPDHAAKFTPRVFIDGDAWIKNKGIPYASGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9241488 9243285 + Lag0031496.1 Lac11g0858 586716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0858 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 215 IPR035513 -
Lac11g0858 570 SMART PMEI_2 58 210 IPR006501 GO:0004857(InterPro)
Lac11g0858 570 CDD PMEI-like_3 65 216 - -
Lac11g0858 570 Gene3D - 254 569 IPR012334 -
Lac11g0858 570 NCBIfam pectinesterase inhibitor domain 58 214 IPR006501 GO:0004857(InterPro)
Lac11g0858 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Lac11g0858 570 PANTHER PECTINESTERASE 16 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac11g0858 570 FunFam Pectinesterase 254 569 - -
Lac11g0858 570 SUPERFAMILY Pectin lyase-like 257 567 IPR011050 -
Lac11g0858 570 FunFam Pectinesterase 59 215 - -
Lac11g0858 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac11g0858 570 Pfam Plant invertase/pectin methylesterase inhibitor 61 210 IPR006501 GO:0004857(InterPro)
Lac11g0858 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 215 IPR035513 -
Lac11g0858 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0858 Lac-Chr11:9241488 Lac7g0905 Lac-Chr7:7568420 2.60E-202 dispersed
Lac11g0857 Lac-Chr11:9235100 Lac11g0858 Lac-Chr11:9241488 4.90E-286 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0858 K01051 - csv:101221958 930.243