Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0883 ATGTGCGGTGGTGCCATCATCTCTGGTTTTATTGAAAAGAAGCGCAGTCGGAAGCTTACTAATGGATCTCTCTGGTCCGACATCGACCCTTTTTCCGACCTCCTCGGCCTCGATTATTCCAATGTGAGAAGTGAGAAACCTCAGAAAAGAGAACCAGCTACGGCGGAGACGGCGGCGGCCCCGCCTCTGCCGCCGGAGAAGGCTCGAAAAGCTCGGAAAAATATGTACAGAGGAATCCGGCAGCGGCCGTGGGGAAAATGGGCGGCGGAGATTCGGGACCCACATAAAGGCGTCCGAGTTTGGCTCGGCACTTTCAACACCGCCGAGGAAGCCGCCAGAGCCTACGATGAGGCGGCGAAAAGGATCCGAGGAGAAAAGGCAAAACTCAACTTCGCTCCTCCGCCGCCGTCGCCGCCGTTACTGGAGGCTCAGCCTCAAATCCCGGCTAAAAAACGCTGCGTCCTTCCCGAACAGACTGGGGATTGTTTCAGTTCCACCGGCCCACCGCCGCCTGGCACACGTGCGAACAACTCGTGTGAGAACGACGGGTTCTACTACGGCGAGGAATGGGCGAGTTTGAGATCCTTCCTGGGTCTGGATTGTGAAGAGCAACAACCGAGTCAACTCGGTGGAAGTGACGAGTTTGACCGAGTTGCTGAGGACCTGTGGATGCTGGACGACATGTCGTTGAATCAGCAGAAATTCAGTCAAATGGTGTAG 720 56.11 MCGGAIISGFIEKKRSRKLTNGSLWSDIDPFSDLLGLDYSNVRSEKPQKREPATAETAAAPPLPPEKARKARKNMYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDEAAKRIRGEKAKLNFAPPPPSPPLLEAQPQIPAKKRCVLPEQTGDCFSSTGPPPPGTRANNSCENDGFYYGEEWASLRSFLGLDCEEQQPSQLGGSDEFDRVAEDLWMLDDMSLNQQKFSQMV 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9559818 9560992 + Lag0031521.1 Lac11g0883 586741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0883 239 Coils Coil 108 128 - -
Lac11g0883 239 CDD AP2 76 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 MobiDBLite consensus disorder prediction 42 71 - -
Lac11g0883 239 PANTHER DNA-BINDING DOMAIN 55 157 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac11g0883 239 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 FunFam Ethylene-responsive transcription factor 2 74 133 - -
Lac11g0883 239 SUPERFAMILY DNA-binding domain 75 132 IPR016177 GO:0003677(InterPro)
Lac11g0883 239 SMART rav1_2 75 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 Pfam AP2 domain 76 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g0883 239 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0883 K09286 - - csv:101222764 320.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0883 Lac-Chr11:9559818 Lac4g3058 Lac-Chr4:48723681 2.00E-31 dispersed
Lac8g2719 Lac-Chr8:44648602 Lac11g0883 Lac-Chr11:9559818 2.50E-16 dispersed
Lac11g0883 Lac-Chr11:9559818 Lac7g0913 Lac-Chr7:7636928 1.70E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g146 . . . . . . . . Cmo08g01215 . Cma06g01543 Cma14g01606 . Car14g01425 . . . . . . . . . . Cla06g00460 Cam06g0491 Cec06g0494 Cco06g0493 Clacu06g0477 Cmu06g0478 Cre06g1251 Cone14ag0033 Cone15ag0034 Cone11ag0474 Cone18ag1036 . Csa06g01779 Chy11g01533 . . . . . . Bpe13g00674 . Bma06g01490 Sed09g0260 . Cmo14g01642 Cma08g01242 . Car08g01117 . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla05g00674 Cam05g0740 Cec05g0747 Cco05g0747 Clacu05g0733 Cmu05g0698 Cre05g0772 Lsi09g01454 Csa03g01492 Chy06g00730 Cme11g02037
Vvi7g335 . . . . Bpe03g00472 . Bma10g00984 . . . . Cma14g00916 . Car14g00834 . . . . . . . . . . . . . . . . . . . Cone18ag0731 Cone11ag0675 . . . . Blo07g00576 . Bda05g00375 . . . . . Sed09g0260 . Cmo14g00943 . . . . . . Bhi12g02034 Tan06g2707 Cmetu11g1571 Lac11g0883 Hepe03g0081 . Lcy12g0762 Cla10g01062 Cam10g1093 Cec10g1126 Cco10g1096 Clacu10g1110 Cmu10g1887 Cre10g1272 . Csa04g00099 . Cme07g02122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002900 0 2 0 1 1 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 3 2 2 2 2 2 2 3 2 1 55
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22918 PF00847 AP2 4.00E-15 CL0081 Lac TF