Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0905 | ATGGATCTGAGCCTCATGAAGGGATCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAAGCCACTGAAATGGTTTCTGATCAGTTTCCGGCGGGTCTTCGTGTCCTGGTTGTGGACGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGTAATCGGGCAGAGATTGCATTGTCCATGCTTCGTGAGAACAAAAACGGGTTCGATATTGTCTTAAGTGACGTGCATATGCCTGACATGGATGGTTTCAAACTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTCATCATGATGTCAGCAGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGATTACTTGATCAAACCTGTTCGAATAGAAGCACTCAGGAACCTATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGGAGCGTGGATGATGGAGATCGAGAGCAAAATCCATCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCAAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCGACTTTAAAAAAGCCCAGGGTGGTATGGTCCGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAATGTTCCTGGGCTTACTAGGGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACACCAGTGTAATTTGAACAACTCTTTTATCAACCCCCAAGACCCACCTTTTGGGTCAATGTCAATGGCCTCATTCAATGGGATTGATCTTCAGACGCTTTCGGTCACCGGTCAACTCTCGCCTCAAAGTCTCGCTGCACTCCAAGCAACAGGACTTCGTAGGCCTACAGCAAAATCTAGCATATCCATGGCTCTTGTCGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAACAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAGATGGAGCCAAAGCAGCTTGCCAATATGCACCCTTCTGTACAGACTCAGGGGAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGTACTCAACTAATGCATTTGTCTCAACAGCACACTGGAGGACAGACTATAAATAACTCTCCTGCTGGCCACTTACCCAGAATTCCATCGACAATAAGGAAGCCGATCATATCAGGTAGCATTACGAGGGGAAATGGTGCTGCTGATAATAGCCAAGGACCCGGATACAACCTAATTTCGCCAGCATCGTCGATGGTGAACTTTCCAATGAACCAAACCACTGAATTGTCAAACAATTTTTCTCTTCAGAGTGATTCGATGGTATCTACCCTGACTTGTAAAGGGGTGTTTCAAGAAGAGATTAGCTCAGATCTAAAAGGGTCGGGCGGATTAATGTCGAGTTATGATGTTTATAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAAGCAGCCTGGCCTTCGGTACTTCTCACCATGGGAACTTCATACAGGATAACTTTGATATCTCATCCTCAACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAAAATTCATCCGTCGTTGGAAAGACTATCTTTTCCTTTTCAGATGGAACTCAACCCGAGAATGCACAAAGTAACGGGCAAAACTCGCTTCTCAATCCCGTGGAGGTCAAACCTCAGAGAATCCCAGATTCAAGCTATCAAACTGACCTCTTATCCGAGAACTATGGCCAGGATGAACTTCTCGGTGTCTTCCTCAAACAACAACAACAAGGAGGAGACAACGGATCAAGGTACCAAACGGAGAATATTTGTGTTTAG | 2016 | 44.35 | MDLSLMKGSMPTPTSISARKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLWQHVVRKRKTEWKDLEQSGSVDDGDREQNPSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSHQCNLNNSFINPQDPPFGSMSMASFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMHPSVQTQGNINMQLNIKSEHGGTQLMHLSQQHTGGQTINNSPAGHLPRIPSTIRKPIISGSITRGNGAADNSQGPGYNLISPASSMVNFPMNQTTELSNNFSLQSDSMVSTLTCKGVFQEEISSDLKGSGGLMSSYDVYNDLHLQKSHDWDSQNVSSLAFGTSHHGNFIQDNFDISSSTLIHHGFPSSQTNGQNQNSSVVGKTIFSFSDGTQPENAQSNGQNSLLNPVEVKPQRIPDSSYQTDLLSENYGQDELLGVFLKQQQQGGDNGSRYQTENICV | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 9768244 | 9771570 | + | Lag0031543.1 | Lac11g0905 | 586763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0905 | 671 | MobiDBLite | consensus disorder prediction | 190 | 210 | - | - | |
Lac11g0905 | 671 | ProSiteProfiles | Response regulatory domain profile. | 34 | 149 | IPR001789 | GO:0000160(InterPro) | |
Lac11g0905 | 671 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 30 | 366 | IPR045279 | GO:0009736(InterPro) | |
Lac11g0905 | 671 | MobiDBLite | consensus disorder prediction | 597 | 620 | - | - | |
Lac11g0905 | 671 | Pfam | Response regulator receiver domain | 35 | 143 | IPR001789 | GO:0000160(InterPro) | |
Lac11g0905 | 671 | SUPERFAMILY | Homeodomain-like | 210 | 270 | IPR009057 | - | |
Lac11g0905 | 671 | MobiDBLite | consensus disorder prediction | 174 | 189 | - | - | |
Lac11g0905 | 671 | FunFam | Two-component response regulator | 209 | 272 | - | - | |
Lac11g0905 | 671 | Gene3D | - | 33 | 165 | - | - | |
Lac11g0905 | 671 | SUPERFAMILY | CheY-like | 32 | 156 | IPR011006 | - | |
Lac11g0905 | 671 | Gene3D | - | 210 | 272 | - | - | |
Lac11g0905 | 671 | PIRSF | RR_ARR_type-B | 15 | 664 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Lac11g0905 | 671 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 213 | 266 | IPR006447 | GO:0003677(InterPro) | |
Lac11g0905 | 671 | MobiDBLite | consensus disorder prediction | 156 | 173 | - | - | |
Lac11g0905 | 671 | Pfam | Myb-like DNA-binding domain | 215 | 265 | IPR001005 | - | |
Lac11g0905 | 671 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 212 | 269 | IPR017930 | - | |
Lac11g0905 | 671 | SMART | REC_2 | 33 | 145 | IPR001789 | GO:0000160(InterPro) | |
Lac11g0905 | 671 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - | |
Lac11g0905 | 671 | FunFam | Two-component response regulator | 33 | 170 | - | - | |
Lac11g0905 | 671 | CDD | REC_typeB_ARR-like | 35 | 149 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0905 | Lac-Chr11:9768244 | Lac2g0557 | Lac-Chr2:4210486 | 1.10E-84 | dispersed | |
Lac12g1826 | Lac-Chr12:34637805 | Lac11g0905 | Lac-Chr11:9768244 | 9.60E-40 | transposed | |
Lac10g2310 | Lac-Chr10:35371390 | Lac11g0905 | Lac-Chr11:9768244 | 8.50E-21 | wgd | |
Lac11g0905 | Lac-Chr11:9768244 | Lac4g2494 | Lac-Chr4:44245865 | 3.20E-26 | wgd | |
Lac11g0905 | Lac-Chr11:9768244 | Lac7g0922 | Lac-Chr7:7732095 | 1.80E-215 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22919 | PF00072 | Response_reg | 8.90E-22 | CL0304 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0905 | K14491 | - | csv:101210138 | 1175.23 |