Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0905 ATGGATCTGAGCCTCATGAAGGGATCGATGCCGACGCCGACTTCAATTTCTGCTAGAAAAGCCACTGAAATGGTTTCTGATCAGTTTCCGGCGGGTCTTCGTGTCCTGGTTGTGGACGATGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGTAATCGGGCAGAGATTGCATTGTCCATGCTTCGTGAGAACAAAAACGGGTTCGATATTGTCTTAAGTGACGTGCATATGCCTGACATGGATGGTTTCAAACTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTCATCATGATGTCAGCAGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGATTACTTGATCAAACCTGTTCGAATAGAAGCACTCAGGAACCTATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGGAGCGTGGATGATGGAGATCGAGAGCAAAATCCATCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCAAAGAGGAGGAGGGATGCAGAAGAAGAGCCTGAGGAGAGGGACGATACATCGACTTTAAAAAAGCCCAGGGTGGTATGGTCCGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATCGACAAGGCTGTTCCTAAAAAGATATTGGAGTTGATGAATGTTCCTGGGCTTACTAGGGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTATCTTAGAAGGCTTAGTGGAGTATCATCGTCACACTCACACCAGTGTAATTTGAACAACTCTTTTATCAACCCCCAAGACCCACCTTTTGGGTCAATGTCAATGGCCTCATTCAATGGGATTGATCTTCAGACGCTTTCGGTCACCGGTCAACTCTCGCCTCAAAGTCTCGCTGCACTCCAAGCAACAGGACTTCGTAGGCCTACAGCAAAATCTAGCATATCCATGGCTCTTGTCGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAACAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAGATGGAGCCAAAGCAGCTTGCCAATATGCACCCTTCTGTACAGACTCAGGGGAACATAAACATGCAACTCAATATCAAGAGCGAACATGGTGGTACTCAACTAATGCATTTGTCTCAACAGCACACTGGAGGACAGACTATAAATAACTCTCCTGCTGGCCACTTACCCAGAATTCCATCGACAATAAGGAAGCCGATCATATCAGGTAGCATTACGAGGGGAAATGGTGCTGCTGATAATAGCCAAGGACCCGGATACAACCTAATTTCGCCAGCATCGTCGATGGTGAACTTTCCAATGAACCAAACCACTGAATTGTCAAACAATTTTTCTCTTCAGAGTGATTCGATGGTATCTACCCTGACTTGTAAAGGGGTGTTTCAAGAAGAGATTAGCTCAGATCTAAAAGGGTCGGGCGGATTAATGTCGAGTTATGATGTTTATAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAAGCAGCCTGGCCTTCGGTACTTCTCACCATGGGAACTTCATACAGGATAACTTTGATATCTCATCCTCAACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAAAATTCATCCGTCGTTGGAAAGACTATCTTTTCCTTTTCAGATGGAACTCAACCCGAGAATGCACAAAGTAACGGGCAAAACTCGCTTCTCAATCCCGTGGAGGTCAAACCTCAGAGAATCCCAGATTCAAGCTATCAAACTGACCTCTTATCCGAGAACTATGGCCAGGATGAACTTCTCGGTGTCTTCCTCAAACAACAACAACAAGGAGGAGACAACGGATCAAGGTACCAAACGGAGAATATTTGTGTTTAG 2016 44.35 MDLSLMKGSMPTPTSISARKATEMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNLWQHVVRKRKTEWKDLEQSGSVDDGDREQNPSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHSHQCNLNNSFINPQDPPFGSMSMASFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMHPSVQTQGNINMQLNIKSEHGGTQLMHLSQQHTGGQTINNSPAGHLPRIPSTIRKPIISGSITRGNGAADNSQGPGYNLISPASSMVNFPMNQTTELSNNFSLQSDSMVSTLTCKGVFQEEISSDLKGSGGLMSSYDVYNDLHLQKSHDWDSQNVSSLAFGTSHHGNFIQDNFDISSSTLIHHGFPSSQTNGQNQNSSVVGKTIFSFSDGTQPENAQSNGQNSLLNPVEVKPQRIPDSSYQTDLLSENYGQDELLGVFLKQQQQGGDNGSRYQTENICV 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9768244 9771570 + Lag0031543.1 Lac11g0905 586763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0905 671 MobiDBLite consensus disorder prediction 190 210 - -
Lac11g0905 671 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160(InterPro)
Lac11g0905 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 366 IPR045279 GO:0009736(InterPro)
Lac11g0905 671 MobiDBLite consensus disorder prediction 597 620 - -
Lac11g0905 671 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160(InterPro)
Lac11g0905 671 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Lac11g0905 671 MobiDBLite consensus disorder prediction 174 189 - -
Lac11g0905 671 FunFam Two-component response regulator 209 272 - -
Lac11g0905 671 Gene3D - 33 165 - -
Lac11g0905 671 SUPERFAMILY CheY-like 32 156 IPR011006 -
Lac11g0905 671 Gene3D - 210 272 - -
Lac11g0905 671 PIRSF RR_ARR_type-B 15 664 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac11g0905 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677(InterPro)
Lac11g0905 671 MobiDBLite consensus disorder prediction 156 173 - -
Lac11g0905 671 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Lac11g0905 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Lac11g0905 671 SMART REC_2 33 145 IPR001789 GO:0000160(InterPro)
Lac11g0905 671 MobiDBLite consensus disorder prediction 156 210 - -
Lac11g0905 671 FunFam Two-component response regulator 33 170 - -
Lac11g0905 671 CDD REC_typeB_ARR-like 35 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0905 Lac-Chr11:9768244 Lac2g0557 Lac-Chr2:4210486 1.10E-84 dispersed
Lac12g1826 Lac-Chr12:34637805 Lac11g0905 Lac-Chr11:9768244 9.60E-40 transposed
Lac10g2310 Lac-Chr10:35371390 Lac11g0905 Lac-Chr11:9768244 8.50E-21 wgd
Lac11g0905 Lac-Chr11:9768244 Lac4g2494 Lac-Chr4:44245865 3.20E-26 wgd
Lac11g0905 Lac-Chr11:9768244 Lac7g0922 Lac-Chr7:7732095 1.80E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22919 PF00072 Response_reg 8.90E-22 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0905 K14491 - csv:101210138 1175.23