Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0922 ATGTCTCTCTCCATGAAAGCTGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATGTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATCCATGCAATTCTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGCTTAGTGGTGGCAGATGAGAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAATCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATCGTCCTCGTTCATTATCGTGAAACACAAGAGTTGCAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTAATCATGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCTTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTCGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTTCCATGCCTAAAGGAGACAGACTTTCATGCTTTGACCAACAGAACCAGGTCCCAATAAATGTGGCCAACAATTTATTGGGGCACGCGTCTTCCTTTAATAACCCAGTTGAGTCAACTGGAAGTGCCAATGGCAATATCAGTTTTACAGGGAGTGCCTATTTGCCGTTAATAAGTGGTCAAACAAATTTGAATGCAGAGAGTAAGCAATCCGTTCCAATTACTTCATTGGACAATTTGTTAAACGATGGTTTGCAAAGTCAGGACAGTTTTGGACGATGGATAAACGAAGTCATCACTGACTCTCCTGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCCAAACTGATCCAACATTAGATCAACGTCAATCTTCCGTTATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGAGTACTTACATCTGGCAAAGTCCAAGATAGTGGTCGTGTGTGGTGATAACAGTGTCGATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACAGTTATACATGAGCTTAGATGCCCAAAAACCTATTAGTCAAGTTCTGAATTTTGAGTACCGTGCACCACTTTTACCGCCTATAGTTGCTTCAGAACAGATTAACAAGTGGGAAGAGTTTCAAGTTCAAATGCGGCTTGCCCATTTGTTGTTTTCTACATCAAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCATTGCCCTGAGCGATGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAATCAATTAATGAAAATAAAACTCCATTTCCACAAGCAAGAGAGGGTCTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTGCCCGGTCAGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGAGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGGTATATGGCTGCAGATCTTGCATCTATGAATGGTTTTGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGACATGAGCTTAGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAATAACCGATGCCATTTGCCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCTGCTTACCGGACAGCAGCTGATGCGGCAGCACGCATTCAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGTAAAGACTTCCTTAATATGCGTCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTTCGCGGGCTTCAAGTTGCACCTGCTGAAGAAACAGAACAGCAGGAAATTGGCATAGTAGAGGACTTCTATCGTGTATCTCAAAAACAGGCAGAAGAGCGAGTTGAGAGAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGCAGGATGAAGTTGACCTACGATGAAGCAGAGCTGGAATATGAAGAACTTTCGCATCCTGATATGGAATTGTATCACTGA 2664 42.08 MSLSMKADVQGSLVGSEIHGFHTLQDVDVKNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPKSLVVADEKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQELQSSPSTSMNSNCGSVSDPSTPWLLSEELDSRANHVYSVGENELSELSDTTTVMNHEQRLHEINTLEWDELLATDEPFKPSMPKGDRLSCFDQQNQVPINVANNLLGHASSFNNPVESTGSANGNISFTGSAYLPLISGQTNLNAESKQSVPITSLDNLLNDGLQSQDSFGRWINEVITDSPGTVIDPAIEPSISSIHNSQTDPTLDQRQSSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNEYLHLAKSKIVVVCGDNSVDVDFVQPGVYRCLVQPHSPGLVQLYMSLDAQKPISQVLNFEYRAPLLPPIVASEQINKWEEFQVQMRLAHLLFSTSKSLSIMSTKLSPIALSDAKKLAVKTSDISDSWIYLLKSINENKTPFPQAREGLLEIILRSRLREWLIERVAEGSKKSTEFDVKGQGVIHLCAILGYTWAIHLFARSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYMAADLASMNGFDGLAAYLSEKALVSHFNDMSLAGNVSGSLETSTITDAICPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEETEQQEIGIVEDFYRVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMKLTYDEAELEYEELSHPDMELYH 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10037357 10049163 + Lag0031560.1 Lac11g0922 586780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0922 887 ProSiteProfiles Ankyrin repeat region circular profile. 575 603 - -
Lac11g0922 887 SUPERFAMILY Ankyrin repeat 537 637 IPR036770 -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 687 716 - -
Lac11g0922 887 SMART CG_1_2 32 119 IPR005559 GO:0003677(InterPro)
Lac11g0922 887 SUPERFAMILY E set domains 339 426 IPR014756 -
Lac11g0922 887 SMART iq_5 686 708 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 762 784 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 840 862 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 739 761 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART ANK_2a 575 604 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Coils Coil 854 874 - -
Lac11g0922 887 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Gene3D - 741 787 - -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 740 766 - -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 842 870 - -
Lac11g0922 887 Gene3D Immunoglobulins 333 429 IPR013783 -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 763 787 - -
Lac11g0922 887 ProSiteProfiles CG-1 DNA-binding domain profile. 1 124 IPR005559 GO:0003677(InterPro)
Lac11g0922 887 Pfam Ankyrin repeats (3 copies) 547 607 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Pfam IPT/TIG domain 340 425 IPR002909 -
Lac11g0922 887 Pfam IQ calmodulin-binding motif 765 784 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 Gene3D - 516 637 IPR036770 -
Lac11g0922 887 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 75 872 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac11g0922 887 Pfam CG-1 domain 75 117 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0922 K21596 - - csv:101211298 1407.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0922 Lac-Chr11:10037357 Lac4g1835 Lac-Chr4:37508664 2.80E-91 dispersed
Lac11g0922 Lac-Chr11:10037357 Lac5g1940 Lac-Chr5:37727040 5.00E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22922 PF12796 Ank_2 3.70E-07 CL0465 Lac TF