Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0922 ATGTCTCTCTCCATGAAAGCTGATGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATGTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGGAAGATGGCTTCGCCCAAATGAAATCCATGCAATTCTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGCTTAGTGGTGGCAGATGAGAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAATCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATCGTCCTCGTTCATTATCGTGAAACACAAGAGTTGCAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGGGCTAATCATGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCTTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTCGAGTGGGATGAACTTCTTGCGACAGACGAGCCTTTCAAACCTTCCATGCCTAAAGGAGACAGACTTTCATGCTTTGACCAACAGAACCAGGTCCCAATAAATGTGGCCAACAATTTATTGGGGCACGCGTCTTCCTTTAATAACCCAGTTGAGTCAACTGGAAGTGCCAATGGCAATATCAGTTTTACAGGGAGTGCCTATTTGCCGTTAATAAGTGGTCAAACAAATTTGAATGCAGAGAGTAAGCAATCCGTTCCAATTACTTCATTGGACAATTTGTTAAACGATGGTTTGCAAAGTCAGGACAGTTTTGGACGATGGATAAACGAAGTCATCACTGACTCTCCTGGTACAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCCATTCACAATTCCCAAACTGATCCAACATTAGATCAACGTCAATCTTCCGTTATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATCACTGGATATTTTCACAATGAGTACTTACATCTGGCAAAGTCCAAGATAGTGGTCGTGTGTGGTGATAACAGTGTCGATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACAGTTATACATGAGCTTAGATGCCCAAAAACCTATTAGTCAAGTTCTGAATTTTGAGTACCGTGCACCACTTTTACCGCCTATAGTTGCTTCAGAACAGATTAACAAGTGGGAAGAGTTTCAAGTTCAAATGCGGCTTGCCCATTTGTTGTTTTCTACATCAAAGAGCCTGAGCATCATGTCGACTAAATTGTCACCCATTGCCCTGAGCGATGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAATCAATTAATGAAAATAAAACTCCATTTCCACAAGCAAGAGAGGGTCTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAAAGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTATACATCTATTTGCCCGGTCAGGTTTATCAATAAATTTTCGAGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGAGAGAAAATGGTAGCTGTTCTTTTATCAGTGGGGGCGAAGCCAAACTTGGTAACTGATCCCTCATCAAAGAACCCTCTGGGGTATATGGCTGCAGATCTTGCATCTATGAATGGTTTTGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACATTTTAATGACATGAGCTTAGCTGGAAATGTTAGTGGTTCATTGGAAACTAGTACAATAACCGATGCCATTTGCCCAGATAGCATCAGTGAGGAGCAGATGTATATGAAAGAAACGTTAGCTGCTTACCGGACAGCAGCTGATGCGGCAGCACGCATTCAAGCTGCATTCCGTGAGCATTCTTTAAAGCAAAGGACTCAAGCAATTGAATTCTCCACCCCTGAAGATGAAGCACGTGGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAACTTTGAGACGCGAAAAAGAATGGCAGCTGCTGCTCGTATTCAATACAGATTCCGCACTTGGAAGATCCGTAAAGACTTCCTTAATATGCGTCGTCAAGCTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTTCGCGGGCTTCAAGTTGCACCTGCTGAAGAAACAGAACAGCAGGAAATTGGCATAGTAGAGGACTTCTATCGTGTATCTCAAAAACAGGCAGAAGAGCGAGTTGAGAGAGCTGTTGTACGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGCAGGATGAAGTTGACCTACGATGAAGCAGAGCTGGAATATGAAGAACTTTCGCATCCTGATATGGAATTGTATCACTGA 2664 42.08 MSLSMKADVQGSLVGSEIHGFHTLQDVDVKNIREEASGRWLRPNEIHAILCNYKYFVIHVKPVNLPKSLVVADEKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQELQSSPSTSMNSNCGSVSDPSTPWLLSEELDSRANHVYSVGENELSELSDTTTVMNHEQRLHEINTLEWDELLATDEPFKPSMPKGDRLSCFDQQNQVPINVANNLLGHASSFNNPVESTGSANGNISFTGSAYLPLISGQTNLNAESKQSVPITSLDNLLNDGLQSQDSFGRWINEVITDSPGTVIDPAIEPSISSIHNSQTDPTLDQRQSSVMEQIFNITDVSPAWAFSTEKTKILITGYFHNEYLHLAKSKIVVVCGDNSVDVDFVQPGVYRCLVQPHSPGLVQLYMSLDAQKPISQVLNFEYRAPLLPPIVASEQINKWEEFQVQMRLAHLLFSTSKSLSIMSTKLSPIALSDAKKLAVKTSDISDSWIYLLKSINENKTPFPQAREGLLEIILRSRLREWLIERVAEGSKKSTEFDVKGQGVIHLCAILGYTWAIHLFARSGLSINFRDKFGWTALHWAAYYGREKMVAVLLSVGAKPNLVTDPSSKNPLGYMAADLASMNGFDGLAAYLSEKALVSHFNDMSLAGNVSGSLETSTITDAICPDSISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTQAIEFSTPEDEARGIIAAMKIQHAYRNFETRKRMAAAARIQYRFRTWKIRKDFLNMRRQAIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPAEETEQQEIGIVEDFYRVSQKQAEERVERAVVRVQAMFRSKKAQEEYRRMKLTYDEAELEYEELSHPDMELYH 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10037357 10049163 + Lag0031560.1 Lac11g0922 586780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0922 887 ProSiteProfiles Ankyrin repeat region circular profile. 575 603 - -
Lac11g0922 887 SUPERFAMILY Ankyrin repeat 537 637 IPR036770 -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 687 716 - -
Lac11g0922 887 SMART CG_1_2 32 119 IPR005559 GO:0003677(InterPro)
Lac11g0922 887 SUPERFAMILY E set domains 339 426 IPR014756 -
Lac11g0922 887 SMART iq_5 686 708 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 762 784 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 840 862 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART iq_5 739 761 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 SMART ANK_2a 575 604 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Coils Coil 854 874 - -
Lac11g0922 887 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Gene3D - 741 787 - -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 740 766 - -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 842 870 - -
Lac11g0922 887 Gene3D Immunoglobulins 333 429 IPR013783 -
Lac11g0922 887 ProSiteProfiles IQ motif profile. 763 787 - -
Lac11g0922 887 ProSiteProfiles CG-1 DNA-binding domain profile. 1 124 IPR005559 GO:0003677(InterPro)
Lac11g0922 887 Pfam Ankyrin repeats (3 copies) 547 607 IPR002110 GO:0005515(InterPro)
Lac11g0922 887 Pfam IPT/TIG domain 340 425 IPR002909 -
Lac11g0922 887 Pfam IQ calmodulin-binding motif 765 784 IPR000048 GO:0005515(InterPro)
Lac11g0922 887 Gene3D - 516 637 IPR036770 -
Lac11g0922 887 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 75 872 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac11g0922 887 Pfam CG-1 domain 75 117 IPR005559 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0922 Lac-Chr11:10037357 Lac4g1835 Lac-Chr4:37508664 2.80E-91 dispersed
Lac11g0922 Lac-Chr11:10037357 Lac5g1940 Lac-Chr5:37727040 5.00E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22922 PF12796 Ank_2 3.70E-07 CL0465 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0922 K21596 - csv:101211298 1407.89