Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g0955 | ATGCTCGTTTTTTCCAAGATCGGAGCTAGACTCAGGCCGAAACACACTAGTCAAGACTACAGACTAGTTTCTGAATCTGCTGCACGGCCTACACACAAGCATTTTTTCTTCTACTTTCTGTCTGTTTTCTTTCTTCTTGTTTTTCTTTTTCTTTTAATCTTCAAGATTAAGCAGTCAGTCGGAGTGTTGTGTATTGATCCGTTGTTCTTGGTTTTTATGGGAACTCCACCAGCAGAGGAGCTTCTCAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCTGATTCCAATACAGACCACCATCATCATCACCATCAGCGCTCTCAATCGATTTCGCCTCAGCGTTCTAGATTTGCTACGGCTCGGAGGAGAGGCCCCGCTGCTGGAGCTTTAGACGGCGCCGCCGCCGCCTGGAAGAAAGGCTCTTCCTCCTTTCGACATTCTTCTCCACTTCAGAGAGAGAGTAGGACTCGTGACCCTTTGAATGCCGCCGCCGGAGTCGGAACCGCCGCCGGCTCTGGCCCCGCCGCTGTTAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAAATATCGCATAATTTATTGGAACCGAGCCGCTGAAATTGTGTATGGATATTCTGCGGCAGAGGCTCTTGGCCAGGACGCCGTTGGACTTCTAGTAGATCCCGAGGACTTCGCCATTGCCAATGATGTAATTCATCGTGTCATGGCGGGGGAGAATTGGACTGGTCACTTCCCTGTAAAGAACAAAATGGGGCAGAAATTTATAGTTGTTGCCACTAACTCTCCGTTCTACGATGATGGCACATTGGTCGGGATTATCTGTGTATCGAGCGATTCACGGCCGTTTCAAGAATTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGCTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCGAACTTGGCATCGAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACCGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGAGATAGTTATCAATCTGATCATGGCTTTCCGGATGGAGTTCTTTGTGACCATCGGGAAGACGCAAATTCGAGTGGAGCTAGCACGCCTCGGGGAGATTCCACAACTCATGGTGCTTTTTCCCAGGTTGAAGAGAAGTTATCTGGCAAACTGATCAGGGATTCTGGTGATGAGATTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCCAAAGCAGAAGAGTGGATTGCTAAGAAAGGCTTATCATGGCCGTGGAAAGGGACCGAGCATGAAGGAGGATCTGAAGCAAGGGCAGCCCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCATCTGGGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCCTGGTCATCGTTTAATGTTAACAGCACTAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTTGACACGGAAACAGACTGCTTGGATTATGAAATCCTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTATCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGGGGAATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTGTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGTCTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACACCTCAATGGATGGCGCCTGAAGTTCTTCGTAACGAGCCCTCAGATGAGAAGTCCGACATATACAGTTTCGGAGTCATATTATGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTAATTGGGGCTGTTGGATTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCTCAATGGGCTTCTATAATTGAAAGCTGCTGGCACAGCGAACCTGCAAACCGGCCATCCTTCCAGGTTCTGATAGAAAGGCTTAGAGAGCTGCAGAGGAAGTTTGCTATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAGTACTCCTCAAAAGGAAACATGA | 2556 | 46.32 | MLVFSKIGARLRPKHTSQDYRLVSESAARPTHKHFFFYFLSVFFLLVFLFLLIFKIKQSVGVLCIDPLFLVFMGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNTDHHHHHHQRSQSISPQRSRFATARRRGPAAGALDGAAAAWKKGSSSFRHSSPLQRESRTRDPLNAAAGVGTAAGSGPAAVNFTNKQYLNILQSMGQSVHIFDLKYRIIYWNRAAEIVYGYSAAEALGQDAVGLLVDPEDFAIANDVIHRVMAGENWTGHFPVKNKMGQKFIVVATNSPFYDDGTLVGIICVSSDSRPFQELKIPLAAGSKQQDADSSMLRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDSYQSDHGFPDGVLCDHREDANSSGASTPRGDSTTHGAFSQVEEKLSGKLIRDSGDEIKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEHEGGSEARAARFVWPWLQNDQEAEPANHKSFSSSGKPEMQQNDGHRAVNNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDTETDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIITEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLIERLRELQRKFAIQLQAARSGGDSTPQKET | 851 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10528968 | 10533531 | + | Lag0031593.1 | Lac11g0955 | 586813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g0955 | 851 | PRINTS | Tyrosine kinase catalytic domain signature | 647 | 660 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | PRINTS | Tyrosine kinase catalytic domain signature | 752 | 774 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | PRINTS | Tyrosine kinase catalytic domain signature | 796 | 818 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | PRINTS | Tyrosine kinase catalytic domain signature | 686 | 704 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | PRINTS | Tyrosine kinase catalytic domain signature | 733 | 743 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | MobiDBLite | consensus disorder prediction | 109 | 138 | - | - | |
Lac11g0955 | 851 | CDD | PAS | 207 | 307 | IPR000014 | - | |
Lac11g0955 | 851 | NCBIfam | PAS domain S-box protein | 198 | 307 | IPR000014 | - | |
Lac11g0955 | 851 | Gene3D | Phosphorylase Kinase; domain 1 | 566 | 650 | - | - | |
Lac11g0955 | 851 | ProSiteProfiles | Protein kinase domain profile. | 573 | 833 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | FunFam | PAS domain-containing protein tyrosine kinase | 566 | 650 | - | - | |
Lac11g0955 | 851 | SUPERFAMILY | Protein kinase-like (PK-like) | 559 | 823 | IPR011009 | - | |
Lac11g0955 | 851 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 200 | 307 | IPR035965 | - | |
Lac11g0955 | 851 | Gene3D | PAS domain | 208 | 310 | - | - | |
Lac11g0955 | 851 | ProSiteProfiles | PAS repeat profile. | 196 | 267 | IPR000014 | - | |
Lac11g0955 | 851 | Pfam | PAS fold | 199 | 305 | IPR013767 | GO:0006355(InterPro) | |
Lac11g0955 | 851 | SMART | pas_2 | 198 | 265 | IPR000014 | - | |
Lac11g0955 | 851 | Gene3D | Transferase(Phosphotransferase) domain 1 | 651 | 850 | - | - | |
Lac11g0955 | 851 | FunFam | PAS domain-containing protein tyrosine kinase family protein | 651 | 842 | - | - | |
Lac11g0955 | 851 | SMART | serkin_6 | 573 | 833 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | Pfam | Protein tyrosine and serine/threonine kinase | 573 | 825 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | CDD | STKc_MAP3K-like | 579 | 825 | - | - | |
Lac11g0955 | 851 | Coils | Coil | 78 | 98 | - | - | |
Lac11g0955 | 851 | MobiDBLite | consensus disorder prediction | 499 | 528 | - | - | |
Lac11g0955 | 851 | MobiDBLite | consensus disorder prediction | 370 | 430 | - | - | |
Lac11g0955 | 851 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 692 | 704 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g0955 | 851 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 125 | 828 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac11g0955 | 851 | MobiDBLite | consensus disorder prediction | 408 | 428 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0955 | Lac-Chr11:10528968 | Lac3g2146 | Lac-Chr3:26804401 | 8.80E-98 | dispersed | |
Lac8g2560 | Lac-Chr8:43304097 | Lac11g0955 | Lac-Chr11:10528968 | 2.60E-35 | dispersed | |
Lac11g0955 | Lac-Chr11:10528968 | Lac2g0452 | Lac-Chr2:3325129 | 4.80E-96 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85749 | PF07714 | PK_Tyr_Ser-Thr | 6.90E-69 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g0955 | - | - | - | 0.0 |