Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0955 ATGCTCGTTTTTTCCAAGATCGGAGCTAGACTCAGGCCGAAACACACTAGTCAAGACTACAGACTAGTTTCTGAATCTGCTGCACGGCCTACACACAAGCATTTTTTCTTCTACTTTCTGTCTGTTTTCTTTCTTCTTGTTTTTCTTTTTCTTTTAATCTTCAAGATTAAGCAGTCAGTCGGAGTGTTGTGTATTGATCCGTTGTTCTTGGTTTTTATGGGAACTCCACCAGCAGAGGAGCTTCTCAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCTGATTCCAATACAGACCACCATCATCATCACCATCAGCGCTCTCAATCGATTTCGCCTCAGCGTTCTAGATTTGCTACGGCTCGGAGGAGAGGCCCCGCTGCTGGAGCTTTAGACGGCGCCGCCGCCGCCTGGAAGAAAGGCTCTTCCTCCTTTCGACATTCTTCTCCACTTCAGAGAGAGAGTAGGACTCGTGACCCTTTGAATGCCGCCGCCGGAGTCGGAACCGCCGCCGGCTCTGGCCCCGCCGCTGTTAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTTGACCTTAAATATCGCATAATTTATTGGAACCGAGCCGCTGAAATTGTGTATGGATATTCTGCGGCAGAGGCTCTTGGCCAGGACGCCGTTGGACTTCTAGTAGATCCCGAGGACTTCGCCATTGCCAATGATGTAATTCATCGTGTCATGGCGGGGGAGAATTGGACTGGTCACTTCCCTGTAAAGAACAAAATGGGGCAGAAATTTATAGTTGTTGCCACTAACTCTCCGTTCTACGATGATGGCACATTGGTCGGGATTATCTGTGTATCGAGCGATTCACGGCCGTTTCAAGAATTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGCTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCAAAGTTATCGAACTTGGCATCGAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACCGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGAGATAGTTATCAATCTGATCATGGCTTTCCGGATGGAGTTCTTTGTGACCATCGGGAAGACGCAAATTCGAGTGGAGCTAGCACGCCTCGGGGAGATTCCACAACTCATGGTGCTTTTTCCCAGGTTGAAGAGAAGTTATCTGGCAAACTGATCAGGGATTCTGGTGATGAGATTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCCAAAGCAGAAGAGTGGATTGCTAAGAAAGGCTTATCATGGCCGTGGAAAGGGACCGAGCATGAAGGAGGATCTGAAGCAAGGGCAGCCCGTTTTGTTTGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTTCTCTTCATCTGGGAAACCAGAAATGCAGCAAAACGATGGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCCTGGTCATCGTTTAATGTTAACAGCACTAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTTGACACGGAAACAGACTGCTTGGATTATGAAATCCTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTTTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAGCTTAGGCACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTATCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGGGGAATGAACTATCTTCATCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCTTCGAACCTGTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGTCTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACACCTCAATGGATGGCGCCTGAAGTTCTTCGTAACGAGCCCTCAGATGAGAAGTCCGACATATACAGTTTCGGAGTCATATTATGGGAGCTTGCAACCGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTAATTGGGGCTGTTGGATTCATGAACCAACGACTTGAAATCCCCAAAGACGTGGATCCTCAATGGGCTTCTATAATTGAAAGCTGCTGGCACAGCGAACCTGCAAACCGGCCATCCTTCCAGGTTCTGATAGAAAGGCTTAGAGAGCTGCAGAGGAAGTTTGCTATTCAATTACAGGCAGCTCGTTCTGGTGGAGATAGTACTCCTCAAAAGGAAACATGA 2556 46.32 MLVFSKIGARLRPKHTSQDYRLVSESAARPTHKHFFFYFLSVFFLLVFLFLLIFKIKQSVGVLCIDPLFLVFMGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNTDHHHHHHQRSQSISPQRSRFATARRRGPAAGALDGAAAAWKKGSSSFRHSSPLQRESRTRDPLNAAAGVGTAAGSGPAAVNFTNKQYLNILQSMGQSVHIFDLKYRIIYWNRAAEIVYGYSAAEALGQDAVGLLVDPEDFAIANDVIHRVMAGENWTGHFPVKNKMGQKFIVVATNSPFYDDGTLVGIICVSSDSRPFQELKIPLAAGSKQQDADSSMLRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDSYQSDHGFPDGVLCDHREDANSSGASTPRGDSTTHGAFSQVEEKLSGKLIRDSGDEIKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEHEGGSEARAARFVWPWLQNDQEAEPANHKSFSSSGKPEMQQNDGHRAVNNEASGSWSSFNVNSTSSASSCGSTSSSAVNKVDTETDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIITEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWHSEPANRPSFQVLIERLRELQRKFAIQLQAARSGGDSTPQKET 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10528968 10533531 + Lag0031593.1 Lac11g0955 586813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0955 851 PRINTS Tyrosine kinase catalytic domain signature 647 660 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 PRINTS Tyrosine kinase catalytic domain signature 752 774 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 PRINTS Tyrosine kinase catalytic domain signature 796 818 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 PRINTS Tyrosine kinase catalytic domain signature 686 704 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 PRINTS Tyrosine kinase catalytic domain signature 733 743 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 MobiDBLite consensus disorder prediction 109 138 - -
Lac11g0955 851 CDD PAS 207 307 IPR000014 -
Lac11g0955 851 NCBIfam PAS domain S-box protein 198 307 IPR000014 -
Lac11g0955 851 Gene3D Phosphorylase Kinase; domain 1 566 650 - -
Lac11g0955 851 ProSiteProfiles Protein kinase domain profile. 573 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 FunFam PAS domain-containing protein tyrosine kinase 566 650 - -
Lac11g0955 851 SUPERFAMILY Protein kinase-like (PK-like) 559 823 IPR011009 -
Lac11g0955 851 SUPERFAMILY PYP-like sensor domain (PAS domain) 200 307 IPR035965 -
Lac11g0955 851 Gene3D PAS domain 208 310 - -
Lac11g0955 851 ProSiteProfiles PAS repeat profile. 196 267 IPR000014 -
Lac11g0955 851 Pfam PAS fold 199 305 IPR013767 GO:0006355(InterPro)
Lac11g0955 851 SMART pas_2 198 265 IPR000014 -
Lac11g0955 851 Gene3D Transferase(Phosphotransferase) domain 1 651 850 - -
Lac11g0955 851 FunFam PAS domain-containing protein tyrosine kinase family protein 651 842 - -
Lac11g0955 851 SMART serkin_6 573 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 Pfam Protein tyrosine and serine/threonine kinase 573 825 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 CDD STKc_MAP3K-like 579 825 - -
Lac11g0955 851 Coils Coil 78 98 - -
Lac11g0955 851 MobiDBLite consensus disorder prediction 499 528 - -
Lac11g0955 851 MobiDBLite consensus disorder prediction 370 430 - -
Lac11g0955 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 692 704 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g0955 851 PANTHER SERINE-THREONINE PROTEIN KINASE 125 828 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac11g0955 851 MobiDBLite consensus disorder prediction 408 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0955 Lac-Chr11:10528968 Lac3g2146 Lac-Chr3:26804401 8.80E-98 dispersed
Lac8g2560 Lac-Chr8:43304097 Lac11g0955 Lac-Chr11:10528968 2.60E-35 dispersed
Lac11g0955 Lac-Chr11:10528968 Lac2g0452 Lac-Chr2:3325129 4.80E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85749 PF07714 PK_Tyr_Ser-Thr 6.90E-69 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0955 - - - 0.0