Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0967 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCGTTCGGGCATGCTACTGATAACTTCACCTCCCTTGGAGTCATTGGAACCAATTGCGGTGCCAAAGACTCCAAGGACAGCTTACTCTGGTTCTATGATTACGGCAACTATGCTTCCGGAGATTTCTCCATGGCTGTCGTCCAGGCCAACCACGTGCTTGAGGACCAGACCCACATTCAATCTGGCCCTTTTGGTACTTTCCTCGGAATCTACGACGGCCACGGCGGCCCCGACGCCGCTCGATTCGTCTGCGACAACTTGTTTACGCGTTTTCAAGCAATTTCAGACGAAGAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCAAACAGAAGAAGGGTTCACAGCCGTCGTGTCAGAGTTGTGGAATACTCGACCTCAGATAGCAACAGTTGGGACGTGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACGTGGCGAGTCTTGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACCGGAGAGATTGCTGCCATTCAGTTATCAACTGAGCATAATGCAAACCTTGAGGATATCAGGCATGAATTAAGAGATATGCATCCAAACGATCCTCAAATTGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATATGAAACATGCTCGGTATAATACTGACAGAATCAATGCTAAATTTAGACTTCCTGAACCGATGAATATGCCAATATTGACTGCTGTACCTACGATTATTGCTCATCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACATCTAACCAATGAAAAAGCAGTGGATATTGTCCATAATCATCCTCGTGCAGGAAGTGCAAAAAGGCTCGTGAAGGCTGCCCTTCAAGAAGCAGCTAGAAAACGAGAGATGCGGTACTCAGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCACGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGACCTTATATCCAGAAGTAACGTCCTCCTAGATCAGCCATTATCAGTCCGGAGTGCCCTTGATCATTGA 1143 46.02 MLRGFMNLLSLCWKPFGHATDNFTSLGVIGTNCGAKDSKDSLLWFYDYGNYASGDFSMAVVQANHVLEDQTHIQSGPFGTFLGIYDGHGGPDAARFVCDNLFTRFQAISDEERGVVTRETILNAFRQTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYVASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEDIRHELRDMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYMKHARYNTDRINAKFRLPEPMNMPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVDIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSALDH 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10660091 10663929 + Lag0031605.1 Lac11g0967 586825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0967 380 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Lac11g0967 380 Gene3D - 47 365 IPR036457 -
Lac11g0967 380 CDD PP2Cc 56 356 IPR001932 -
Lac11g0967 380 PANTHER PROTEIN PHOSPHATASE 54 355 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac11g0967 380 SMART PP2C_4 49 354 IPR001932 -
Lac11g0967 380 FunFam Probable protein phosphatase 2C 42 46 364 - -
Lac11g0967 380 SUPERFAMILY PP2C-like 62 357 IPR036457 -
Lac11g0967 380 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Lac11g0967 380 Pfam Protein phosphatase 2C 79 323 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0967 Lac-Chr11:10660091 Lac5g0081 Lac-Chr5:679443 3.20E-116 dispersed
Lac11g0967 Lac-Chr11:10660091 Lac9g1843 Lac-Chr9:38204733 7.60E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0967 K01102 - csv:101207284 706.827