Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac11g0971 | ATGGCGTCATCTGTTCTTTCGAACTCCGATCGCGCGCGGGAGTCTTCGAGGAAGCAAAGGAAGAAGAAAAATCACGGCAACAGAGATCATCATCAAAACCAGAACCATATCAAATGGAAATCTCAAGCTCAGCAAGAAATTTACTCGTCCAAACTGGTACGAGCATTGAATCAAGTGAGGCTCAGTCCTTCCAATGAGGCGCCGCGCCGCGGTAGGGCCGTACGTGAGGCCGCCGATAGAGTCCTCGCCGTCGCCGCCAAGGGGAGAACCAGATGGAGTCGAGCAATCTTAACGAACAGGCTGAAGCTCAAGTTCAGGAAGCCGAAGAGACAAAGAGCATCCACCGCCGGAAACAGCCGTCCGAAGAAACCTAGAGTCAGCGTTTTGCGGTTGAAAGGGAAGTCATTACCGGCGGTGCAACGGAAAGTTAGGGTTCTTGGACGGCTAGTTCCCGGTTGCCGGAAAGAACCATTGCCGGTTATCCTGGAAGAGGCGACCGATTACATTGCTGCTCTTGAAATGCAAGTTCGAGCTATGAGTGCCCTCGCCGAGTTGCTCTCGGCCTCAACTTCTGTTGCAGGCTCTAGTTCCGCTCCTCCAAGCTGA | 606 | 53.3 | MASSVLSNSDRARESSRKQRKKKNHGNRDHHQNQNHIKWKSQAQQEIYSSKLVRALNQVRLSPSNEAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPKRQRASTAGNSRPKKPRVSVLRLKGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSVAGSSSAPPS | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 10690553 | 10691158 | + | Lag0031609.1 | Lac11g0971 | 586829 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac11g0971 | 201 | MobiDBLite | consensus disorder prediction | 106 | 125 | - | - | |
| Lac11g0971 | 201 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 142 | 189 | IPR036638 | GO:0046983(InterPro) | |
| Lac11g0971 | 201 | CDD | bHLH_AtIBH1_like | 128 | 183 | IPR044549 | GO:0006355(InterPro) | |
| Lac11g0971 | 201 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Lac11g0971 | 201 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 36 | 186 | IPR044660 | GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g0971 | Lac-Chr11:10690553 | Lac3g3025 | Lac-Chr3:48374829 | 9.80E-40 | dispersed | |
| Lac7g0970 | Lac-Chr7:8240581 | Lac11g0971 | Lac-Chr11:10690553 | 7.40E-62 | transposed | |
| Lac1g0445 | Lac-Chr1:9780806 | Lac11g0971 | Lac-Chr11:10690553 | 3.30E-14 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac11g0971 | - | - | - | 0.0 |