Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g0975 ATGTTTGAGCTTATTGCAATCACTTCGGGCAACATGGAAGCATCGTATGGAGGAGGGAACGAAAACCAGCCACCGTACGGCACGCCCCCTATCTGCCCGGAGGCAGAAGCCATCATCTTCTCTTGGGTCCAAACTGCCATTGCTGAAGACCCCCGAATGGCGGCGTCTTTGCTTCGACTCCATTTCCATGACTGCTTTGTCAATGAAAGTCATTGTGGGTGCGACGCTTCGGTGTTGCTGGATGACAACGACAACTTTGTTGGTGAAAAAACTGCAGCTCCAAATGTGAACTCGCTGAGGGGATTTGAAGTGATTGATGCCATAAAATCTGAGATCGAATCTGTTTGCCCACAGACAGTTTCATGTGCCGACATTCTTGCAATTGCGGCCAGAGACTCTGTTGTACTTTCAGGAGGACCCGTTTGGAAGGTGGAATTTGGAAGAGGAGACAGCCTAAGTGCCAGCAAAGCAGCAGCACAAAACAACATCCCTGCCCCAAACTCCACTGTCGCCATTCTTGTTTCTAAGTTCCAGAACCTTGGCCTCTCTCTCAGAGATATGGTTGCTCTCTCAGGGGCACACACACTGGGACGAGCCCGATGTGTTACGTTCAGTTCTAGGCTGCAAGCCAACGGGAACAACCCCAACGAAGGAGCAAACCAGGAGTTCATTGAGTCGCTAAAACAACTCTGCTCGGAATCTGGTAGCAGCTCAACATTGGCACAGCTCGACCTTGTAACCCCTGTGACGTTTGACAATCAGTACTACATCAATCTTCTCTCTGGAGAGGGGTTGCTCCAGTCTGATCTGGCTCTCATAACTGATGATTACCAGACGAGAGCAATGGTCGAAACCTACGCTGAAGACCCGATTGCCTTCTTTGAAGACTTCAAGCAGTCAATGGTGAGAATGGGAAGCCTCAAACCACCCACTGGGACACAGACCATGATCCGAACTAACTGTCGAACCAATATCATCTCACAGTACAGAAAACTTGCGGCAGACACAAACTCCCTTGAACCATCGCTCATCCCTTCTGTGGTTTCTGCACCTTACAAAGCTCCTCTCCGCCTTAGAACTTCAAGGCAGTAG 1092 49.82 MFELIAITSGNMEASYGGGNENQPPYGTPPICPEAEAIIFSWVQTAIAEDPRMAASLLRLHFHDCFVNESHCGCDASVLLDDNDNFVGEKTAAPNVNSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVVLSGGPVWKVEFGRGDSLSASKAAAQNNIPAPNSTVAILVSKFQNLGLSLRDMVALSGAHTLGRARCVTFSSRLQANGNNPNEGANQEFIESLKQLCSESGSSSTLAQLDLVTPVTFDNQYYINLLSGEGLLQSDLALITDDYQTRAMVETYAEDPIAFFEDFKQSMVRMGSLKPPTGTQTMIRTNCRTNIISQYRKLAADTNSLEPSLIPSVVSAPYKAPLRLRTSRQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10742419 10744121 + Lag0031613.1 Lac11g0975 586833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g0975 363 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lac11g0975 363 FunFam Peroxidase 164 304 - -
Lac11g0975 363 FunFam Peroxidase 29 172 - -
Lac11g0975 363 PANTHER PEROXIDASE 72-RELATED 31 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 ProSiteProfiles Plant heme peroxidase family profile. 26 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 Gene3D Peroxidase, domain 2 164 305 - -
Lac11g0975 363 Gene3D - 32 322 - -
Lac11g0975 363 Pfam Peroxidase 42 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Lac11g0975 363 CDD secretory_peroxidase 32 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac11g0975 363 SUPERFAMILY Heme-dependent peroxidases 31 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0975 Lac-Chr11:10742419 Lac5g2087 Lac-Chr5:39510460 4.90E-82 dispersed
Lac9g2893 Lac-Chr9:46816850 Lac11g0975 Lac-Chr11:10742419 3.00E-59 dispersed
Lac11g0975 Lac-Chr11:10742419 Lac13g1829 Lac-Chr13:22207321 3.60E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g0975 K00430 - csv:101205763 556.984