Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1003 | ATGAAATGCTTTCTTTCATCGAATATCTGCCCCATGTGCTTTAGCAGTGAGGAACATTTGTCACTTCCAACCACCTTCTTGTGTTTCAGATTAACTTGGCGAGGAGAAGGGTATAGTAGGGCAGTTAGTTGTTCAGATATCGTTGAAGATGCCCATATAGAGTCAACTGCAATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGGCATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTACCCACCTCAGATCTATGTTCAAGTGTCCTATGCCTAGTGGTTTCTATGCAGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCCTTTGTCAAGAGGAATGCCATGAGTTTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTGATTCTATTTCCTTGAAAGATTTGGAGAATTCTCATCGTAAGGCATTCCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCATGTGGGACAACTGCGTTGACAGCATTGGTTCTTGGAAGGCATTTGCTTGTTGCAAACGCTGGTGACTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTTCCAATGTCTCAAGATCACAGACCTTCTAATTTACTCGAGCTCAAGCGAGTGGAAGGGATGGGTGGGTTTGTAGATGATGGGTATGTTAATGGCTATATCTCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATAGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAACATGCTATTTTAACAAAGGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTAATGTCAAGCCAATATGCTGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCACCAAAGTTCCCAAGAATTAGTCCTAGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCGCCCGGCTGTGTTCCTCAGCAGCGAATATGGAAGTCGTGTTGTCTGACAGAAGAGGCTAGAAGTAGATTGAGCAGCTTGTTAGAAGGAAACTGA | 1104 | 44.11 | MKCFLSSNICPMCFSSEEHLSLPTTFLCFRLTWRGEGYSRAVSCSDIVEDAHIESTAIDFVPNIRSGSYADIGARHSMDDEHVCIDDLSTHLRSMFKCPMPSGFYAVFDGHGGPHAAAFVKRNAMSLFFEDADWLKMLDIDSISLKDLENSHRKAFLLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNSSSSPLISEPQVEHAILTKDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICFSSPGCVPQQRIWKSCCLTEEARSRLSSLLEGN | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11300133 | 11302062 | + | Lag0031641.1 | Lac11g1003 | 586861 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1003 | 367 | Pfam | Protein phosphatase 2C | 73 | 327 | IPR001932 | - | |
Lac11g1003 | 367 | PANTHER | PROTEIN PHOSPHATASE 2C | 63 | 335 | IPR015655 | GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro) | |
Lac11g1003 | 367 | FunFam | Probable protein phosphatase 2C 22 | 48 | 338 | - | - | |
Lac11g1003 | 367 | SMART | PP2C_4 | 55 | 333 | IPR001932 | - | |
Lac11g1003 | 367 | ProSitePatterns | PPM-type phosphatase domain signature. | 104 | 112 | IPR000222 | GO:0043169(InterPro) | |
Lac11g1003 | 367 | CDD | PP2Cc | 64 | 335 | IPR001932 | - | |
Lac11g1003 | 367 | SMART | PP2C_SIG_2 | 80 | 335 | IPR001932 | - | |
Lac11g1003 | 367 | SUPERFAMILY | PP2C-like | 58 | 337 | IPR036457 | - | |
Lac11g1003 | 367 | ProSiteProfiles | PPM-type phosphatase domain profile. | 65 | 335 | IPR001932 | - | |
Lac11g1003 | 367 | Gene3D | - | 49 | 338 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1003 | Lac-Chr11:11300133 | Lac4g2563 | Lac-Chr4:44802793 | 1.50E-102 | dispersed | |
Lac11g1003 | Lac-Chr11:11300133 | Lac2g0725 | Lac-Chr2:5585682 | 5.20E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22924 | PF00481 | PP2C | 8.10E-64 | CL0238 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1003 | K14803 | - | csv:101207477 | 587.415 |