Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1003 ATGAAATGCTTTCTTTCATCGAATATCTGCCCCATGTGCTTTAGCAGTGAGGAACATTTGTCACTTCCAACCACCTTCTTGTGTTTCAGATTAACTTGGCGAGGAGAAGGGTATAGTAGGGCAGTTAGTTGTTCAGATATCGTTGAAGATGCCCATATAGAGTCAACTGCAATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGGCATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTACCCACCTCAGATCTATGTTCAAGTGTCCTATGCCTAGTGGTTTCTATGCAGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCCTTTGTCAAGAGGAATGCCATGAGTTTATTCTTTGAAGATGCTGATTGGTTAAAAATGCTGGATATTGATTCTATTTCCTTGAAAGATTTGGAGAATTCTCATCGTAAGGCATTCCTACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCATGTGGGACAACTGCGTTGACAGCATTGGTTCTTGGAAGGCATTTGCTTGTTGCAAACGCTGGTGACTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTTCCAATGTCTCAAGATCACAGACCTTCTAATTTACTCGAGCTCAAGCGAGTGGAAGGGATGGGTGGGTTTGTAGATGATGGGTATGTTAATGGCTATATCTCAGTAACCAGAACCTTGGGGGATTGGGACCTGAAATTGCCAAATAGCTCCTCATCACCTCTGATTTCTGAGCCACAAGTGGAACATGCTATTTTAACAAAGGATGACGAGTTCTTGATCCTTGGCTGTGATGGGATTTGGGATGTAATGTCAAGCCAATATGCTGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCACCAAAGTTCCCAAGAATTAGTCCTAGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCGCCCGGCTGTGTTCCTCAGCAGCGAATATGGAAGTCGTGTTGTCTGACAGAAGAGGCTAGAAGTAGATTGAGCAGCTTGTTAGAAGGAAACTGA 1104 44.11 MKCFLSSNICPMCFSSEEHLSLPTTFLCFRLTWRGEGYSRAVSCSDIVEDAHIESTAIDFVPNIRSGSYADIGARHSMDDEHVCIDDLSTHLRSMFKCPMPSGFYAVFDGHGGPHAAAFVKRNAMSLFFEDADWLKMLDIDSISLKDLENSHRKAFLLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNSSSSPLISEPQVEHAILTKDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVLEALRLNTSDNLTAIVICFSSPGCVPQQRIWKSCCLTEEARSRLSSLLEGN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11300133 11302062 + Lag0031641.1 Lac11g1003 586861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1003 367 Pfam Protein phosphatase 2C 73 327 IPR001932 -
Lac11g1003 367 PANTHER PROTEIN PHOSPHATASE 2C 63 335 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Lac11g1003 367 FunFam Probable protein phosphatase 2C 22 48 338 - -
Lac11g1003 367 SMART PP2C_4 55 333 IPR001932 -
Lac11g1003 367 ProSitePatterns PPM-type phosphatase domain signature. 104 112 IPR000222 GO:0043169(InterPro)
Lac11g1003 367 CDD PP2Cc 64 335 IPR001932 -
Lac11g1003 367 SMART PP2C_SIG_2 80 335 IPR001932 -
Lac11g1003 367 SUPERFAMILY PP2C-like 58 337 IPR036457 -
Lac11g1003 367 ProSiteProfiles PPM-type phosphatase domain profile. 65 335 IPR001932 -
Lac11g1003 367 Gene3D - 49 338 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1003 Lac-Chr11:11300133 Lac4g2563 Lac-Chr4:44802793 1.50E-102 dispersed
Lac11g1003 Lac-Chr11:11300133 Lac2g0725 Lac-Chr2:5585682 5.20E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22924 PF00481 PP2C 8.10E-64 CL0238 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1003 K14803 - csv:101207477 587.415