Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1038 ATGGCTGCCATGGCTTCCTTTTCCTTTTCCTTTTCCTTCTCCTTCTCCTCCTCGCTCCTTCCTTCTTCGCTTTCTTTCGATCATGGCTCCACTTCCTTTTCTCCCGTCTTTCTTTCATCTTCTTCAGATTCCAATACTCGCATTGTTCGCTGTGCATTTGCAGCCCCCGCTAGAAAATCCCCTCCTCCTCCTCCTTCTTCTTCCTCGCCCGTTAAGAAGAGGCACTGGAAGCAAGGTGAATTTCCAGGCATTACAGAGACATCCGCTACCAAGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAACGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCGGACCATATCGCGAACAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCGAACAGCCGTTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCACGTAAGCTTTTTGACACAATGGTTGAAGAAAGATGTGAACCTACCTCCGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGGAACAATCTCATTGATGATGCATTCTCCACTCTTAATCTCATGAAAACCCTCCCTGGCTGCCAGCCTGACGTTTACACTTATAGTACTTTAATCAAGGTTTGTGTCGACGATTCTCGCTTTGAACTAGTTGAATCTTTGTATGAGGAAATGGCCGAACGACTGATAACTCCAAATACGGTAACCCAGAATATAGTCTTAAGTGGGTATGGCAAGATAGGGAAGTATGACCAGATGGAGAAAGTTCTATTAGGAATGCTTGAGAGCACAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAACAAGGGGCAGATTGAAATGATGGAAAGATGGTATGAAAAATTTCGCAATTTTGGCATCGAGCCAGAAACTCGTACATTTAATATTTTGATCGGTGCTTATGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCGACATACAACAACGTGATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAACATGGAGTACACATTTGAGCAGATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATGCCAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATATGAGATTCCCGAGAATACCTCATTTTACAATGCGGTTATATCTGCATGTGCTAAGGCAGAGGATCTGATGGAAATGGACAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATTGCAAAACGTATTCTGTTATGATAGAAGCATATGGAAAGGAAGGCATGAATGACAGGGTTCATTACTTGGAGCTGGAAAAAAAGCAGGTGATTGATGATGCTTCCAATAACGAGTGA 1509 43.41 MAAMASFSFSFSFSFSSSLLPSSLSFDHGSTSFSPVFLSSSSDSNTRIVRCAFAAPARKSPPPPPSSSSPVKKRHWKQGEFPGITETSATKKTPLKNVKKKLDRKNNAKAWANTVTEALSDHIANKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPQRARKLFDTMVEERCEPTSELYTALLAAYCRNNLIDDAFSTLNLMKTLPGCQPDVYTYSTLIKVCVDDSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKYEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDCKTYSVMIEAYGKEGMNDRVHYLELEKKQVIDDASNNE 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11751115 11753023 - Lag0031676.1 Lac11g1038 586896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1038 502 Gene3D Tetratricopeptide repeat domain 282 356 IPR011990 GO:0005515(InterPro)
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Lac11g1038 502 Pfam PPR repeat family 288 336 IPR002885 -
Lac11g1038 502 Pfam PPR repeat family 360 407 IPR002885 -
Lac11g1038 502 Pfam PPR repeat family 182 230 IPR002885 -
Lac11g1038 502 Pfam PPR repeat family 429 476 IPR002885 -
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 150 182 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 220 253 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 433 465 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 185 219 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 327 355 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 362 394 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 292 323 IPR002885 -
Lac11g1038 502 NCBIfam pentatricopeptide repeat 255 289 IPR002885 -
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 288 IPR002885 -
Lac11g1038 502 Gene3D Tetratricopeptide repeat domain 357 500 IPR011990 GO:0005515(InterPro)
Lac11g1038 502 Gene3D Tetratricopeptide repeat domain 96 281 IPR011990 GO:0005515(InterPro)
Lac11g1038 502 PANTHER EXPRESSED PROTEIN 66 486 IPR044179 GO:0003729(InterPro)
Lac11g1038 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Lac11g1038 502 Pfam PPR repeat 258 282 IPR002885 -
Lac11g1038 502 Pfam PPR repeat 150 179 IPR002885 -
Lac11g1038 502 MobiDBLite consensus disorder prediction 54 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1038 Lac-Chr11:11751115 Lac4g1996 Lac-Chr4:39457693 2.60E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35