Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1043 ATGGCGCCCGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAATCCTGGTGGGGGTGTTTATTGTAGTAGTCCTTGTGGTGCTATCAATATGTGTTACTTCACGAAGAAAGTCTAGAAGGGTTAATGGCATGCTTCCTCTCAGCCGTATTCCCACTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTTCAGCAATCCAGAACGGCCCCCACCCCCACGATGGATTCGGATTCGACACGGAATCGGAAAAAGTTCTTCTATATTCAAACAAGGCATATAATTACAGCATATCAAGTTCAGTTGATCACACGGAGATCTATGCTATTGATACTGGAGAAGCAAGCAAGGAAGCAAGTGCTTTGCATAGACCCTCAGATTCAATACCACCAGACCCTTCGCCACTGGCTGGTCTGCCTGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTAATCAATGGGACACCTGTGGCTGTCAAAAAGCTTCTAAATCTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTGGAAGCCTTTGGGCATGTGCGGCATAAGAACTTAGTTCGGTTGCTGGGGTACTGCATTGAAGGAACGCACAGGATACTAGTATATGAATATGTGGACAATGGAAATCTAGAGCAGTGGCTTCATGGAGCTCTATGTCAGTATGGATATCTCACTTGGGAAGCACGAATCAAAATCCTCCTTGGTACTGCTAAGGCGCTGGCATATTTGCACGAGGCAATCGAACCAAAAATTGTGCATCGAGATATTAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCCAAACTACTCGGTGCTGGGAAGAGTCATATAACCACCAGAGTTATGGGAACGTTTGGATATGTGGCGCCAGAATATGCCAAATCTGGACTTCTAAATGAAAAGAGCGACGTTTATAGCTTTGGAGTGGTCCTTTTGGAAGCAATTACTGGGAGAGACCCCGTTGATTATGGTCGTCCAACTCACGAGGTAAATTTGGTAGATTGGCTAAAGATGATGGTAGGAAGCAAACGGTCAGAAGAGGTGGTAGACCCAAATATAGAGAGAAAGCCATCAGTTAGTGAACTGAAGCGAGTTCTTCTGACTGCTTTGAGATGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTGCCCGCATGCTCGAGTCCGAGGAATATCCAATTCCTCGACAGGATCGGAAACCCAGAAAGGGCCATGCTAATGCAACCAAAATGGAGGCTGAGAAACAGGAGAGAGGACCCAGAAGACACAGATAA 1449 45.07 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVVVLVVLSICVTSRRKSRRVNGMLPLSRIPTASKEIKEIGVDHVSAIQNGPHPHDGFGFDTESEKVLLYSNKAYNYSISSSVDHTEIYAIDTGEASKEASALHRPSDSIPPDPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLNLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQYGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSVSELKRVLLTALRCVDPDADKRPKMSQVARMLESEEYPIPRQDRKPRKGHANATKMEAEKQERGPRRHR 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11828326 11830596 - Lag0031681.1 Lac11g1043 586901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1043 482 Pfam Protein kinase domain 177 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1043 482 ProSitePatterns Protein kinases ATP-binding region signature. 181 204 IPR017441 GO:0005524(InterPro)
Lac11g1043 482 FunFam Putative receptor-like serine/threonine-protein kinase 250 461 - -
Lac11g1043 482 SUPERFAMILY Protein kinase-like (PK-like) 159 453 IPR011009 -
Lac11g1043 482 PANTHER OS01G0323000 PROTEIN 1 472 IPR052232 -
Lac11g1043 482 MobiDBLite consensus disorder prediction 432 482 - -
Lac11g1043 482 Gene3D Transferase(Phosphotransferase) domain 1 250 458 - -
Lac11g1043 482 FunFam serine/threonine-protein kinase PBS1-like 152 249 - -
Lac11g1043 482 SMART serkin_6 175 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1043 482 CDD STKc_IRAK 181 446 - -
Lac11g1043 482 Gene3D Phosphorylase Kinase; domain 1 156 249 - -
Lac11g1043 482 ProSiteProfiles Protein kinase domain profile. 175 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1043 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1043 482 MobiDBLite consensus disorder prediction 449 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1043 Lac-Chr11:11828326 Lac9g2257 Lac-Chr9:41932067 1.10E-158 dispersed
Lac11g1043 Lac-Chr11:11828326 Lac3g1859 Lac-Chr3:20715495 1.50E-62 wgd
Lac11g1043 Lac-Chr11:11828326 Lac5g1297 Lac-Chr5:25221919 6.10E-11 wgd
Lac11g1043 Lac-Chr11:11828326 Lac7g1601 Lac-Chr7:18798082 2.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85751 PF00069 Pkinase 1.40E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1043 - - - 0.0