Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1066 | ATGCGACTGGGAAAGTACGAGCTCGGAAAAACTCTCGGCCAAGGCAATTTCGGTAAGGTCGTTTTCGCTAAAGACTCCCAAACCGATCAACCTTTTGCTCTCAAGATCCTCGACAAGACCAGAATCATCCACCTCAACATCACCCATCAGATTAAAAGGGAAATCGGCACCCTCAAACTTCTCAACCATCCCAATATAGTCAGGCTACACGAGGTCTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTATGTGAACGGCGGAGAATTGTTTGATAGAATAGCATCCAAGGGGAAGCTATCGGAAGCCCAAGCCAGAAAAATCTTCCAACAGTTGATTGATGGCGTCAGTTACTGCCATAGGAAAGGCGTTTTCCATAGGGATCTCAAGCTAGAAAACATACTTGTTGATGCCAAGGGAAATATTAAGATATCTGATTTCGGCTTAAGTGCGTTACCCGAGCATTTTAGAAATGACGGTTTGCTTCACACCACGTGTGGAAGCCCGAACTACGTGGCACCTGAGATTCTCGCAAACAGAGGTTATGATGGTGCGGCCTCAGATATATGGTCCTGTGGAGTTATCTTGTACGTAATTCTTACAGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTATCATAAGATCTTTAAAGGAGAAACTCAGATACCCAACTGCCTGTCACAAGGGGCCCAAAATTTGCTCAGAAGGATTCTTGATCCCAACCCTGTTTCTCGGATAAACGTGGCAGGTATCAAAATGGACGAGTGGTTCAGACAAGACTACGATCCAGCCTACCATGACGATGAAGAAGGTGTGCCCATCTCAATGCAACATCAGGTGCAATCTTATCTCGGAGAGAGCGAAAGGAGTTCAGAGTCTCCGAGCACTATAAATGCTTTTCAACTCATTGGAATGTCGTCGTGCCTGGACCTTTCCGGTTTCTTTGAGAAAGAGGACGTTTCAGAGAGGAAGATGAGATTTACAACCAATAATCACTCCGCAAAACAAGACATCCTCAAGCGAATGGAGGATCTTGTCACAGAGATGGGGTGTCTTGTCCACATGAAACAAGGAAGGTTGAAAGTAACGAAGGAGCACAAGGGTGAGAATGGTGTGGGCAGCATACTTTCGTTATCAGCAGAGGTTTTTGAGATAAGTCCATCGCTACATGTCGTAGAATTAAGAAAGTTGCAGGGAGATTCATCTTCATATAGACAGTTGTGTAAAATATTATCAAGTGATTTGGCTATCCCCTCCAGCCAAGACTCGCTCATGACATAG | 1293 | 44.55 | MRLGKYELGKTLGQGNFGKVVFAKDSQTDQPFALKILDKTRIIHLNITHQIKREIGTLKLLNHPNIVRLHEVLASKSKIYMVLEYVNGGELFDRIASKGKLSEAQARKIFQQLIDGVSYCHRKGVFHRDLKLENILVDAKGNIKISDFGLSALPEHFRNDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFKGETQIPNCLSQGAQNLLRRILDPNPVSRINVAGIKMDEWFRQDYDPAYHDDEEGVPISMQHQVQSYLGESERSSESPSTINAFQLIGMSSCLDLSGFFEKEDVSERKMRFTTNNHSAKQDILKRMEDLVTEMGCLVHMKQGRLKVTKEHKGENGVGSILSLSAEVFEISPSLHVVELRKLQGDSSSYRQLCKILSSDLAIPSSQDSLMT | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12375059 | 12379023 | - | Lag0031704.1 | Lac11g1066 | 586924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1066 | 430 | CDD | CIPK_C | 302 | 419 | - | - | |
Lac11g1066 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 87 | - | - | |
Lac11g1066 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Lac11g1066 | 430 | FunFam | Non-specific serine/threonine protein kinase | 298 | 422 | - | - | |
Lac11g1066 | 430 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 409 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lac11g1066 | 430 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1066 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 88 | 268 | - | - | |
Lac11g1066 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 306 | IPR011009 | - | |
Lac11g1066 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac11g1066 | 430 | Pfam | NAF domain | 298 | 357 | IPR004041 | GO:0007165(InterPro) | |
Lac11g1066 | 430 | ProSiteProfiles | NAF domain profile. | 296 | 320 | IPR018451 | GO:0007165(InterPro) | |
Lac11g1066 | 430 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1066 | 430 | FunFam | Non-specific serine/threonine protein kinase | 1 | 300 | - | - | |
Lac11g1066 | 430 | Gene3D | Kinase associated domain 1, KA1 | 295 | 421 | - | - | |
Lac11g1066 | 430 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac11g1066 | 430 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1066 | Lac-Chr11:12375059 | Lac7g1016 | Lac-Chr7:8837848 | 9.40E-157 | dispersed | |
Lac1g0204 | Lac-Chr1:4032789 | Lac11g1066 | Lac-Chr11:12375059 | 8.30E-53 | wgd | |
Lac11g1066 | Lac-Chr11:12375059 | Lac12g1216 | Lac-Chr12:17025241 | 1.30E-41 | wgd | |
Lac11g1066 | Lac-Chr11:12375059 | Lac12g1016 | Lac-Chr12:12021489 | 2.50E-25 | wgd | |
Lac11g1066 | Lac-Chr11:12375059 | Lac7g1857 | Lac-Chr7:26204488 | 3.90E-38 | wgd | |
Lac11g1066 | Lac-Chr11:12375059 | Lac9g0840 | Lac-Chr9:17695424 | 3.10E-51 | wgd | |
Lac11g1066 | Lac-Chr11:12375059 | Lac9g0649 | Lac-Chr9:12989970 | 7.90E-39 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85752 | PF00069 | Pkinase | 2.30E-71 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1066 | K07198 | - | csv:101206030 | 639.802 |