Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1066 ATGCGACTGGGAAAGTACGAGCTCGGAAAAACTCTCGGCCAAGGCAATTTCGGTAAGGTCGTTTTCGCTAAAGACTCCCAAACCGATCAACCTTTTGCTCTCAAGATCCTCGACAAGACCAGAATCATCCACCTCAACATCACCCATCAGATTAAAAGGGAAATCGGCACCCTCAAACTTCTCAACCATCCCAATATAGTCAGGCTACACGAGGTCTTGGCCAGTAAAAGCAAAATTTACATGGTTCTTGAGTATGTGAACGGCGGAGAATTGTTTGATAGAATAGCATCCAAGGGGAAGCTATCGGAAGCCCAAGCCAGAAAAATCTTCCAACAGTTGATTGATGGCGTCAGTTACTGCCATAGGAAAGGCGTTTTCCATAGGGATCTCAAGCTAGAAAACATACTTGTTGATGCCAAGGGAAATATTAAGATATCTGATTTCGGCTTAAGTGCGTTACCCGAGCATTTTAGAAATGACGGTTTGCTTCACACCACGTGTGGAAGCCCGAACTACGTGGCACCTGAGATTCTCGCAAACAGAGGTTATGATGGTGCGGCCTCAGATATATGGTCCTGTGGAGTTATCTTGTACGTAATTCTTACAGGATCACTCCCTTTCGATGATAGAAATTTGTGTGTCCTTTATCATAAGATCTTTAAAGGAGAAACTCAGATACCCAACTGCCTGTCACAAGGGGCCCAAAATTTGCTCAGAAGGATTCTTGATCCCAACCCTGTTTCTCGGATAAACGTGGCAGGTATCAAAATGGACGAGTGGTTCAGACAAGACTACGATCCAGCCTACCATGACGATGAAGAAGGTGTGCCCATCTCAATGCAACATCAGGTGCAATCTTATCTCGGAGAGAGCGAAAGGAGTTCAGAGTCTCCGAGCACTATAAATGCTTTTCAACTCATTGGAATGTCGTCGTGCCTGGACCTTTCCGGTTTCTTTGAGAAAGAGGACGTTTCAGAGAGGAAGATGAGATTTACAACCAATAATCACTCCGCAAAACAAGACATCCTCAAGCGAATGGAGGATCTTGTCACAGAGATGGGGTGTCTTGTCCACATGAAACAAGGAAGGTTGAAAGTAACGAAGGAGCACAAGGGTGAGAATGGTGTGGGCAGCATACTTTCGTTATCAGCAGAGGTTTTTGAGATAAGTCCATCGCTACATGTCGTAGAATTAAGAAAGTTGCAGGGAGATTCATCTTCATATAGACAGTTGTGTAAAATATTATCAAGTGATTTGGCTATCCCCTCCAGCCAAGACTCGCTCATGACATAG 1293 44.55 MRLGKYELGKTLGQGNFGKVVFAKDSQTDQPFALKILDKTRIIHLNITHQIKREIGTLKLLNHPNIVRLHEVLASKSKIYMVLEYVNGGELFDRIASKGKLSEAQARKIFQQLIDGVSYCHRKGVFHRDLKLENILVDAKGNIKISDFGLSALPEHFRNDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILYVILTGSLPFDDRNLCVLYHKIFKGETQIPNCLSQGAQNLLRRILDPNPVSRINVAGIKMDEWFRQDYDPAYHDDEEGVPISMQHQVQSYLGESERSSESPSTINAFQLIGMSSCLDLSGFFEKEDVSERKMRFTTNNHSAKQDILKRMEDLVTEMGCLVHMKQGRLKVTKEHKGENGVGSILSLSAEVFEISPSLHVVELRKLQGDSSSYRQLCKILSSDLAIPSSQDSLMT 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12375059 12379023 - Lag0031704.1 Lac11g1066 586924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1066 430 CDD CIPK_C 302 419 - -
Lac11g1066 430 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lac11g1066 430 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Lac11g1066 430 FunFam Non-specific serine/threonine protein kinase 298 422 - -
Lac11g1066 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 409 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac11g1066 430 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1066 430 Gene3D Transferase(Phosphotransferase) domain 1 88 268 - -
Lac11g1066 430 SUPERFAMILY Protein kinase-like (PK-like) 3 306 IPR011009 -
Lac11g1066 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1066 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Lac11g1066 430 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Lac11g1066 430 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1066 430 FunFam Non-specific serine/threonine protein kinase 1 300 - -
Lac11g1066 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Lac11g1066 430 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1066 430 FunFam Non-specific serine/threonine protein kinase 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1066 Lac-Chr11:12375059 Lac7g1016 Lac-Chr7:8837848 9.40E-157 dispersed
Lac1g0204 Lac-Chr1:4032789 Lac11g1066 Lac-Chr11:12375059 8.30E-53 wgd
Lac11g1066 Lac-Chr11:12375059 Lac12g1216 Lac-Chr12:17025241 1.30E-41 wgd
Lac11g1066 Lac-Chr11:12375059 Lac12g1016 Lac-Chr12:12021489 2.50E-25 wgd
Lac11g1066 Lac-Chr11:12375059 Lac7g1857 Lac-Chr7:26204488 3.90E-38 wgd
Lac11g1066 Lac-Chr11:12375059 Lac9g0840 Lac-Chr9:17695424 3.10E-51 wgd
Lac11g1066 Lac-Chr11:12375059 Lac9g0649 Lac-Chr9:12989970 7.90E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85752 PF00069 Pkinase 2.30E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1066 K07198 - csv:101206030 639.802