Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1075 ATGGCAACGGCCGCGTCTCTGGGGAACCCTGTTCTTACGAGAGGTACGTTACTTGGTTGTATAAGCAAAGAGCAATTCACTTCCCGCAGAGCTCAGAAGATGACGCTCTGTCTCTGCGCCATGGACTCCAAATCAGTGGGTGTTGGAGGTGATGTCTTCTCTGTGACCTCGTCTGCTAAGTCCGGAGTTGATTATCTTGGACAGAGCACCAAAGGAGATATGAATCTCAAACTCGAGCGTCTGGAAGCTTTTGGCGTAGATGGTGAAGAAACCTTAGAAGGTCCTATCGAGGAAGTAGCGAGGTTCGAGACACAGGAAGCCGAGGATCTCCTTCGAGATTTGGGAATCCCGAGTCCTTCATCCAGAAATTCACCACAAGGTATATTTTGTAGCCGAACATTGAATCTTCGATCGATCAGTGCCATTGGATATGACATGGACTACACATTGATGCATTATAATGTCATGGCTTGGGAGGGAAGAGCGTACGACTACTGTATGGAAAATTTAAGGAACATGGGTTTCCCTGTCGATGGACTCGCTTTTGACCCAGACTTGGTTATAAGAGGCCTTGTCATAGACAAAGAGAGAGGTAATTTAGTAAAGGCCGATCGTTTTGGTTATATAAAAAGAGCAATGCATGGAACAAACATGCTTTCTACTCGAGATGTAAGTGAGATTTATGGGAGAGAATTGGTGGATCTACGGAAGGAGAATCGATGGGAGTTCCTCAATACACTCTTTTCTGTATCAGAAGCTGTTGCATATATGCAGATGGTAGACAGATTGGATGATGGAGCCGTAGGAGCAGCACTTGGTCCACTTGATTATAAAGGACTTTACAAGGCTGTTGGGAAAGCACTATTCAGGGCACATGTCGAGGGTCAGCTTAAGAGTGAGATAATGTCTAATCCTGAATTATTTGTGGAGCCTGACCCTGTACTACCATTAGCCCTATTAGATCAAAAAGAGGCAGGAAAAAAGCTTTTGCTTATCACCAACTCAGATTATCATTACACGGATAAAATGATGCAGCATTCTTTTAATAGATTTCTTCCAAATGATATGGGATGGCGAGACCTATTTGATATCGTAATAGTCTCAGCAAGAAAGCCAGAATTTTTCCAAATGTCTCATCCATTGTACGAGGTGGTGACTGGTGAGGGTCTCATGCGCCCATGCTTCAAGGCTGTTGCAGGGGGCTTGTACTCTGGCGGTAGTGCGCAAATGGTTGAGAATTCATTAAACATTCATGGTGATGAGATATTGTATGTAGGTGACCATATTTATACCGATGTAAGCCAATCTAAAGTACACCTGCGCTGGAGAACAGCATTAATTCTACGAGAACTGGAAGAAGAGATTTGA 1368 44.01 MATAASLGNPVLTRGTLLGCISKEQFTSRRAQKMTLCLCAMDSKSVGVGGDVFSVTSSAKSGVDYLGQSTKGDMNLKLERLEAFGVDGEETLEGPIEEVARFETQEAEDLLRDLGIPSPSSRNSPQGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMENLRNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTNMLSTRDVSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRLDDGAVGAALGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSNPELFVEPDPVLPLALLDQKEAGKKLLLITNSDYHYTDKMMQHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAVAGGLYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALILRELEEEI 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12562137 12574301 - Lag0031713.1 Lac11g1075 586933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1075 455 CDD HAD_cN-II 129 451 - -
Lac11g1075 455 NCBIfam HAD-IG family 5'-nucleotidase 128 455 IPR008380 -
Lac11g1075 455 SUPERFAMILY HAD-like 125 455 IPR036412 -
Lac11g1075 455 Pfam 5' nucleotidase family 128 455 IPR008380 -
Lac11g1075 455 FunFam Haloacid dehalogenase hydrolase 287 455 - -
Lac11g1075 455 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 100 455 IPR008380 GO:0008253(PANTHER)
Lac11g1075 455 Gene3D - 289 455 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1075 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1075 Lac-Chr11:12562137 Lac6g0410 Lac-Chr6:3343653 6.90E-49 dispersed
Lac11g1075 Lac-Chr11:12562137 Lac3g0249 Lac-Chr3:1780479 2.20E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g266 Blo01g00017 . . . . . . Bma05g00981 . . . . . . . . . . . . . . . . Cla06g00386 . Cec06g0417 . . . . . Cone15ag0684 . . . . . . . . . . Bpe05g00790 . . . Sed11g1035 . . . . . . Cpe12g00353 . Bhi12g02006 Tan06g2823 Cmetu03g0819 Lac11g1075 Hepe03g0003 . Lcy12g0924 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28