Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1265 ATGAAGCTCGCCCCCTTCCTTCCATGGCCCAACCTCCTCCTCTTCTTCCTCTTCTCCGCTTCTTCATTCCCTCACTCTTCCCCTGTTTCACTTCCCTACGACGAAGCACGAGCGCTTATGTCAATCAAGGCCTCCTTTAGCAATGTAGCTAATGTGCTGCTCGACTGGGATGATCATCATAACAATGATTTCTGTTCATGGCGCGGGGTTTTCTGCGATAATCTTACCCTTTCTGTTGCTGCTCTGAACTTGTCCAGCTTGAGTCTGGGTGGGGAGATTTCACCGGCCATTGGAGATTTGAGGAATTTACAATCAATTGACCTTCAAGGGAATAAACTGACTGGCCAAATCCCTGATGAGATTGGTAACTGTGGTCTTCTTGTCCATTTGGACTTGTCCGATAATCTGCTTTATGGAGACATCCCCTTCACGGTATCAAAGCTAAAGCAGCTTGAGTTCTTAAATCTGAAGAACAATCAGTTGACTGGTCCAATACCTTCGACACTAACCCAGATTCCTAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGGGAGATACCTAGATTAATCTATTGGAATGAAGTACTGCAATATCTTGGATTGCGAGGGAACTTTTTGACAGGGTCGTTGTCCTCTGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGGGGCAACAATCTGACGGGCACGATACCAGATAGCATAGGGAACTGTACAAGTTTTGAAATTCTGGATATATCCTACAACCAGATCTCAGGGGAGATTCCATACAACATTGGATTTCTTCAAGTGGCCACATTATCATTACAGGGTAATAGGCTGTCTGGTAAGATTCCCGATGTCATTGGATTGATGCAGGCCCTTGCCGTCCTGGATTTGAGTGAGAATGAGCTCGAAGGGCCAATACCACCAATACTCGGCAACCTGTCCTACACAGGAAAATTGTACCTGCATGGAAACAAGTTGACTGGGCCTATTCCTCCCGAGCTGGGCAATATGTCAAAGCTTAGCTACTTACAACTTAATGATAACCAGCTGGTTGGCACAATTCCTTCTGAACTTGGAAAATTGGATCAGTTGTTCGAATTGAATCTTGCTAATAATTACCTTGAAGGACCCATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACCGTCTTAACGGATCTATCCCTTTGGGTTTCCAAGATCTAGAGAGCTTGACGTATTTGAATCTTTCAGCAAACAACTTTAAAGGCAGGATTCCTGTTGAGCTGGGACGCATAGTTAACCTCGATACCTTGGATCTATCTCGCAATTACTTCTCGGGTCTTGTTCCTGCTTCTATTGGTGATTTGGAGCACCTTCTTAGCCTCAATTTGAGCGATAATCGACTTGTTGGCCCATTGCCAGCAGAATTTGGAAATCTCCGAAGCATCCAGACTATTGATATGTCATTCAACAACTTCTCCGGTAGCATACCCATGGAGTTGGGTCAACTGCAAAATATTATCTCCCTAATTCTGAACAACAACCATTTGCAAGGGAAGATACCCGATCAGCTGACAAATTGTTTTAGTCTTGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCTATGAAAAATTTCTCTCGATTCGAACCTGATAGCTTTATTGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGATCAATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGACAGCGGTTGTTTGTATGACATTTGGATTCATTATATTGTTGTCAATGGTTATAATTGCCGTGTACAAGTCGAATCCGTCGAAGCAATTGATGAAAGGTTCTAGTAAGACAGGGCAAGGTCCTCCAAATCTCGTGGTACTTCATATGGATATGGCTATTCACACCTTTGATGACATTATGAGAATGACCGAGAATCTAAGTGAGAAGTACATTATTGGTTACGGAGCTTCGAGCACTGTGTACAAATGTTTACTGAAAAATTCCCGACCTATTGCAATTAAGCGACTTTACAATCACTATGCACACAATTTACGGGAGTTTGAGACTGAACTTGAAACTGTTGGTAGCATCAGACATAGAAATCTTGTTAGCCTTCACGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGATCTCTCTGGGATCTGCTTCATGGACCAGGTAAGAAGGTTAAACTGGATTGGGAAGCACGTCTGAAGATCGCGGTTGGAGCTGCACAAGGGCTTACTTATCTTCACCATGATTGCAACCCGCGAATCATTCATCGTGATGTCAAGTCTTCAAATATTCTACTGGATGAAAACTTTGAGGCCCATCTTTCTGATTTTGGGATCGCCAAATGCATCCCAACTGCCAAGACACACGCATCGACTTATGTGCTGGGAACAATTGGCTACATCGATCCAGAGTATGCTCGAACCTCCCGGCTAAACGAGAAGTCTGATGTTTATAGCTTTGGCGTTGTTCTTCTGGAACTACTAACTGGAAAGAAAGCTGTGGATAATGACGCCAATTTGCATCAACTGATATTGTCGAAGACTGACAACAACACTGTGATGGAAGCCGTTGATCCTGAGGTTTCGGTCACCTGCATGGATTTAGGCCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACAAAACACAATCCCTCCGAGAGGCCAACCATGCACGAAGTTGCTCGAGTGTTGATCTCCCTCCAGCCACCACCACCTACCGTGAAACAAACTTCATTCCCCATGAAAACGTTGGATTATGCACAGTTTGTAATTGATAAGGGTCAGAATCAAAACGTAAAAGGGCAGGAGCAGCAGAAATCAGATGTGAATTCTTCGGATGCTCGGTGGTTTGTGCGGTTCGGGGAAGTTATATCTGAACAATAA 2958 43.88 MKLAPFLPWPNLLLFFLFSASSFPHSSPVSLPYDEARALMSIKASFSNVANVLLDWDDHHNNDFCSWRGVFCDNLTLSVAALNLSSLSLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCGLLVHLDLSDNLLYGDIPFTVSKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNFLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGKIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLVGTIPSELGKLDQLFELNLANNYLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQDLESLTYLNLSANNFKGRIPVELGRIVNLDTLDLSRNYFSGLVPASIGDLEHLLSLNLSDNRLVGPLPAEFGNLRSIQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEPDSFIGNPLLCGNWLGSICGPYMEKSRAMLSRTAVVCMTFGFIILLSMVIIAVYKSNPSKQLMKGSSKTGQGPPNLVVLHMDMAIHTFDDIMRMTENLSEKYIIGYGASSTVYKCLLKNSRPIAIKRLYNHYAHNLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKKVKLDWEARLKIAVGAAQGLTYLHHDCNPRIIHRDVKSSNILLDENFEAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGVVLLELLTGKKAVDNDANLHQLILSKTDNNTVMEAVDPEVSVTCMDLGHVRKTFQLALLCTKHNPSERPTMHEVARVLISLQPPPPTVKQTSFPMKTLDYAQFVIDKGQNQNVKGQEQQKSDVNSSDARWFVRFGEVISEQ 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18293078 18298739 - Lag0031903.1 Lac11g1265 587123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1265 985 Pfam Protein kinase domain 659 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1265 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 923 IPR050647 GO:0009553(PANTHER)|GO:0010103(PANTHER)|GO:0048481(PANTHER)
Lac11g1265 985 SUPERFAMILY Protein kinase-like (PK-like) 633 923 IPR011009 -
Lac11g1265 985 SMART serkin_6 656 923 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1265 985 Gene3D Ribonuclease Inhibitor 33 195 IPR032675 -
Lac11g1265 985 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 SUPERFAMILY L domain-like 33 330 - -
Lac11g1265 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 732 933 - -
Lac11g1265 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 197 306 - -
Lac11g1265 985 Gene3D Phosphorylase Kinase; domain 1 622 731 - -
Lac11g1265 985 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 627 731 - -
Lac11g1265 985 ProSiteProfiles Protein kinase domain profile. 656 925 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1265 985 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Lac11g1265 985 SMART LRR_typ_2 411 435 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 220 244 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 459 482 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 100 124 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 148 171 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 172 196 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 507 531 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 291 315 IPR003591 -
Lac11g1265 985 SMART LRR_typ_2 339 363 IPR003591 -
Lac11g1265 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 196 - -
Lac11g1265 985 Pfam Leucine Rich Repeat 366 387 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 320 339 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 533 550 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 150 170 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 413 433 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 Pfam Leucine Rich Repeat 102 124 IPR001611 GO:0005515(InterPro)
Lac11g1265 985 SUPERFAMILY L domain-like 313 570 - -
Lac11g1265 985 Gene3D Transferase(Phosphotransferase) domain 1 732 933 - -
Lac11g1265 985 Gene3D Ribonuclease Inhibitor 308 579 IPR032675 -
Lac11g1265 985 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 307 580 - -
Lac11g1265 985 Gene3D Ribonuclease Inhibitor 196 307 IPR032675 -
Lac11g1265 985 ProSitePatterns Protein kinases ATP-binding region signature. 662 684 IPR017441 GO:0005524(InterPro)
Lac11g1265 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1265 Lac-Chr11:18293078 Lac2g1122 Lac-Chr2:8921133 2.20E-68 dispersed
Lac2g0497 Lac-Chr2:3633493 Lac11g1265 Lac-Chr11:18293078 3.40E-149 transposed
Lac10g1651 Lac-Chr10:17994585 Lac11g1265 Lac-Chr11:18293078 6.10E-08 wgd
Lac11g1265 Lac-Chr11:18293078 Lac11g1602 Lac-Chr11:28044473 3.40E-50 wgd
Lac11g1265 Lac-Chr11:18293078 Lac2g2035 Lac-Chr2:23034129 9.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85754 PF00069 Pkinase 1.40E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1265 K20718 - csv:101213139 1760.73