Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1296 ATGGATGTTTCTGATTCTTCTTCCTCCTCCCAATCCCAACTCTTTGCCTGCCGCTCCGACGACGACATTCTCTTGGCCTCCCGATACCCCAAGAAGAGGGCCGGCAGAAAGAAGTTCAAGGAGACTCGCCACCCTGTCTACCGTGGTGTCCGCCGCCGCAACTCCGGCAAGTGGGTCTGCGAGGTCAGGGAGCCCAATAAGAAGACTAGGATTTGGCTCGGCACTTTCCCCACCGCCGAGATGGCCGCCAGGGCCCACGACGTCGCTGCCATTGCTCTCCGCGGCCGCTCCGCCTGCCTCAATTTCGCCGACTCCGCCTCCACGCTTCCCCTGCCGCCCACCGTCGACGCCAAGGATATTCAGAGGGCCGCTGCCGAGGCTGCGGAGGCCTTTCGCCCGCCGGAGCCTGCGCCTTCCGCGGCGGCGGCCTCGGAGGAGGAGGTGTTTTACTTGGATGAGGAGGCGGTGTTTGGGATGCCGGGGTTGCTGGCGGACATGGCGGAGGCAATGCTGTTGCCGCCGCCGAATTGCGACTATGGGGCTAATTCCATGGATCTCGATGCCGACATGTCGTTATGGAGTTACTCAATTTGA 594 62.29 MDVSDSSSSSQSQLFACRSDDDILLASRYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPLPPTVDAKDIQRAAAEAAEAFRPPEPAPSAAAASEEEVFYLDEEAVFGMPGLLADMAEAMLLPPPNCDYGANSMDLDADMSLWSYSI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19597654 19598247 + Lag0031934.1 Lac11g1296 587154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1296 197 Pfam AP2 domain 45 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 CDD AP2 47 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 195 IPR045277 GO:0003700(InterPro)
Lac11g1296 197 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Lac11g1296 197 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Lac11g1296 197 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac11g1296 197 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2904 Lac-Chr10:43634936 Lac11g1296 Lac-Chr11:19597654 8.70E-31 dispersed
Lac11g1296 Lac-Chr11:19597654 Lac5g2894 Lac-Chr5:47137112 3.90E-65 dispersed
Lac11g1296 Lac-Chr11:19597654 Lac12g1100 Lac-Chr12:13768080 7.90E-26 wgd
Lac11g1296 Lac-Chr11:19597654 Lac2g2706 Lac-Chr2:41819029 6.00E-18 wgd
Lac11g1296 Lac-Chr11:19597654 Lac6g1292 Lac-Chr6:12963221 2.30E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22928 PF00847 AP2 9.00E-16 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1296 - - - 0.0