Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac11g1296 | ATGGATGTTTCTGATTCTTCTTCCTCCTCCCAATCCCAACTCTTTGCCTGCCGCTCCGACGACGACATTCTCTTGGCCTCCCGATACCCCAAGAAGAGGGCCGGCAGAAAGAAGTTCAAGGAGACTCGCCACCCTGTCTACCGTGGTGTCCGCCGCCGCAACTCCGGCAAGTGGGTCTGCGAGGTCAGGGAGCCCAATAAGAAGACTAGGATTTGGCTCGGCACTTTCCCCACCGCCGAGATGGCCGCCAGGGCCCACGACGTCGCTGCCATTGCTCTCCGCGGCCGCTCCGCCTGCCTCAATTTCGCCGACTCCGCCTCCACGCTTCCCCTGCCGCCCACCGTCGACGCCAAGGATATTCAGAGGGCCGCTGCCGAGGCTGCGGAGGCCTTTCGCCCGCCGGAGCCTGCGCCTTCCGCGGCGGCGGCCTCGGAGGAGGAGGTGTTTTACTTGGATGAGGAGGCGGTGTTTGGGATGCCGGGGTTGCTGGCGGACATGGCGGAGGCAATGCTGTTGCCGCCGCCGAATTGCGACTATGGGGCTAATTCCATGGATCTCGATGCCGACATGTCGTTATGGAGTTACTCAATTTGA | 594 | 62.29 | MDVSDSSSSSQSQLFACRSDDDILLASRYPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPLPPTVDAKDIQRAAAEAAEAFRPPEPAPSAAAASEEEVFYLDEEAVFGMPGLLADMAEAMLLPPPNCDYGANSMDLDADMSLWSYSI | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19597654 | 19598247 | + | Lag0031934.1 | Lac11g1296 | 587154 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac11g1296 | 197 | Pfam | AP2 domain | 45 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | CDD | AP2 | 47 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 6 | 195 | IPR045277 | GO:0003700(InterPro) | |
Lac11g1296 | 197 | SUPERFAMILY | DNA-binding domain | 46 | 105 | IPR016177 | GO:0003677(InterPro) | |
Lac11g1296 | 197 | PRINTS | Ethylene responsive element binding protein signature | 69 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | SMART | rav1_2 | 46 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | FunFam | Ethylene-responsive transcription factor 2 | 45 | 104 | - | - | |
Lac11g1296 | 197 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac11g1296 | 197 | Gene3D | AP2/ERF domain | 46 | 104 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2904 | Lac-Chr10:43634936 | Lac11g1296 | Lac-Chr11:19597654 | 8.70E-31 | dispersed | |
Lac11g1296 | Lac-Chr11:19597654 | Lac5g2894 | Lac-Chr5:47137112 | 3.90E-65 | dispersed | |
Lac11g1296 | Lac-Chr11:19597654 | Lac12g1100 | Lac-Chr12:13768080 | 7.90E-26 | wgd | |
Lac11g1296 | Lac-Chr11:19597654 | Lac2g2706 | Lac-Chr2:41819029 | 6.00E-18 | wgd | |
Lac11g1296 | Lac-Chr11:19597654 | Lac6g1292 | Lac-Chr6:12963221 | 2.30E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22928 | PF00847 | AP2 | 9.00E-16 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac11g1296 | - | - | - | 0.0 |