Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac11g1572 ATGTCCGAACCACCACCATCCCCCGATCATGATTCCTCCCTCTCCCCCTCCCCCGCCAAGCTTCGCAAGATCCCCCCTATCCCCATTCGCCGCGATTCCAAACCCAACGCCGGAGACTCCGATTCCGATCAGGACCATCACCTCGCTGAGGATCACCCTCATCAATCTGGCGACTCCTCGATCATCATGGCCTCGTCCCTCGGGTTGAACCACATTCGCACGCGCTCTGCTCCTTTGCCGCTGCGGACCTCTGCCGTTGGCACGCCTTCGAATTTGGGCGACAATTCCAGGAATAATGTCACCGAAGGAACCGAGCCCGAGCCGAAAATTTCATCCCCTGAACTGGGGAAAAAAGTTATGTGGAGTCAATCGAAATCGATGAGATATCCCTCGGCTCTGAATCATGATTTTGAGGTTAATCATGCAGCATTTGCTAAGGAAATTCAGTCTCCACGATTTCGGGCAATACTGCGTGTTACTAGTGGAAGAAAGAAGAGAACCCCTGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAAGGTGTTCGGCCTTTTCCAGTTTGGAAGCCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAACTGGGCATTTTTGCTGGAGATCTTGTAGATATACTTGAAAAGACAGACCGGTCTCAGCCTGAACTTAAAGAGGGTTTGGAGGATTTATTGGTGATTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGGCGAAAGGTGAAGGTATTGTCCAAAATCTAGATGACCGGCGCCAGGAGCTATCATTAGGGGTTCTTAAGCAAGCCCACACCCGTCTTCTTTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGCGGTTATGAAGATGAGCACATTTTGGGTCTTCACCAACTTAGTGATCTGGGAATTTATCCAGAGAAAATTAGGCAGCTCGAACATCTTGACTTTGGTGATCCATTAACTGGGAAAGAAGATGTTGAGAAACAGCTGAAGTTAGTTGGGAAAGATCAAGCCAGTCGCATTGTGAAGCAAGATTTAGATCAAAGTTTTAGTAAAAATACTGGAAATGTTGATCTGGACTCTGCCATAAGTAATGATTCATCGTCAAGCATATATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACACTGACTCTATTGATACAACACCTTCCAAGGATAAACTTGGACTGTTGCATGTACATGAAGCTAAACCTGGTAGTAACAACCAATTAGATACCCCATCTAGTCATATTGAGCATTTAGAAGCACCACCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGCATTTGTGAGGTTGAAATTCCTACTATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCAAAAAGTACACCAAGAAGTAGTGATACTTCCTGTGGAAATTTTGATACTGTTAAGGTTACGACATCAAGTATGCAAGAAGAGATTTTTGAGTTGTCATCTAAAGGAATTAGTTTGTCATGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCTTCCTTCATGGAAAGTCAGGATATTTTTCCTGATCCATCATACAATCGACCATTTATTTTCACACCAGATCCCAGTACAAAATCAATGTCAGGTGGAACTCTAACACCAAGATCACCTCTTTTAACACCAAGATCCAGCCAGATTGAATTGTTGTTGCATGGGCGAAGAGCAATATCCGAACTTGAAAATTATCAGCAGATATACAAATTATTGGAAATTGTTCGTTCCATTGCAAATGTTAACAACTCTGACTATGGTGCATTGGAGTGTATGCTTGATCGATTAGAAGACCTTAAATATGCAATCCAGGATAGGAAAGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTACATCTTTGTGGGCAAATAGAAGATGATAAAGTAGACTCTTCAAATGGCTTGGTTGATGAAGAGAGTTCAGTGGAGGATGATACTGTTCGTAGTTTGCGCGCAAGTCCTGTTAACCCATGTTCAAAAGATCGAACATCCATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCAGAGTTTTCCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTGCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATTTACTCCTTACTGAGGAACCTAGGGTGCTTAGATGAAGATATGGCTCGAATTTATATTGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATCAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCTATCAGTGGAACTGCTTCACTTGGAGACAATGTACCAACATCTCAATCTTTGTCAAAAAGAGAACAGAGACAAAAGCATCCGGTTGTTGGTACTCCGGATTATTTGGCCCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTTGGAGCACCCCCGTTCAATGCAGAATGTCCACAGGTTGAAAATGCTATTGGCACAGGCAATCTGAGACTTCTCAATGAGATTGTTCTGGCTACATGGTTGTGGTGTTTTCCTTTGGAGCCGAACGGTCTGTGCAATAAGGTTATTTTGTACTACCTTTTCTCTTTGAGGTCCCTTCTGCCTTTGCACTCGATGGCCAATCTCCGTCTGACCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTATGCCCCATAGAAACTGTCTACCTGAGACTATCCCTTGGCCCGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTTTGAGACAGTGCCCAGATCGTTACGCACACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCACTTGGCCACGCCCCATTTAG 3420 43.68 MSEPPPSPDHDSSLSPSPAKLRKIPPIPIRRDSKPNAGDSDSDQDHHLAEDHPHQSGDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVTEGTEPEPKISSPELGKKVMWSQSKSMRYPSALNHDFEVNHAAFAKEIQSPRFRAILRVTSGRKKRTPDIKSFSHELNSKGVRPFPVWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKTDRSQPELKEGLEDLLVIARKCATMSPTEFWAKGEGIVQNLDDRRQELSLGVLKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKIRQLEHLDFGDPLTGKEDVEKQLKLVGKDQASRIVKQDLDQSFSKNTGNVDLDSAISNDSSSSIYRMASWKKLPSAAEKNRKDTDSIDTTPSKDKLGLLHVHEAKPGSNNQLDTPSSHIEHLEAPPKEQKVSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSSDTSCGNFDTVKVTTSSMQEEIFELSSKGISLSCRNSEDLLDSLPVTGNSSFMESQDIFPDPSYNRPFIFTPDPSTKSMSGGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLEIVRSIANVNNSDYGALECMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSNGLVDEESSVEDDTVRSLRASPVNPCSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGTASLGDNVPTSQSLSKREQRQKHPVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGAPPFNAECPQVENAIGTGNLRLLNEIVLATWLWCFPLEPNGLCNKVILYYLFSLRSLLPLHSMANLRLTRGNLCTPPLPFGRPMPHRNCLPETIPWPVQVVRIFTDMSISPSLSLRQCPDRYAHSGTEGFEPPNSGTKTRCLTTWPRPI 1139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27336246 27345159 - Lag0032210.1 Lac11g1572 587430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac11g1572 1139 SUPERFAMILY Protein kinase-like (PK-like) 751 999 IPR011009 -
Lac11g1572 1139 SMART serkin_6 766 1068 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1572 1139 MobiDBLite consensus disorder prediction 25 54 - -
Lac11g1572 1139 PANTHER SERINE/THREONINE-PROTEIN KINASE 474 1000 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac11g1572 1139 ProSiteProfiles Protein kinase domain profile. 766 1139 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1572 1139 Gene3D Transferase(Phosphotransferase) domain 1 846 1010 - -
Lac11g1572 1139 MobiDBLite consensus disorder prediction 81 106 - -
Lac11g1572 1139 CDD STKc_MAST_like 772 1000 - -
Lac11g1572 1139 FunFam Probable serine/threonine-protein kinase cot-1 849 1007 - -
Lac11g1572 1139 MobiDBLite consensus disorder prediction 80 113 - -
Lac11g1572 1139 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac11g1572 1139 Gene3D Phosphorylase Kinase; domain 1 763 845 - -
Lac11g1572 1139 Pfam Protein kinase domain 767 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac11g1572 1139 MobiDBLite consensus disorder prediction 1 60 - -
Lac11g1572 1139 FunFam probable serine/threonine protein kinase IREH1 764 853 - -
Lac11g1572 1139 MobiDBLite consensus disorder prediction 929 944 - -
Lac11g1572 1139 MobiDBLite consensus disorder prediction 929 949 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1572 Lac-Chr11:27336246 Lac12g2162 Lac-Chr12:38708462 3.40E-57 dispersed
Lac10g0003 Lac-Chr10:37896 Lac11g1572 Lac-Chr11:27336246 1.10E-254 transposed
Lac1g1040 Lac-Chr1:27328884 Lac11g1572 Lac-Chr11:27336246 1.80E-24 wgd
Lac1g0981 Lac-Chr1:25756996 Lac11g1572 Lac-Chr11:27336246 2.10E-34 wgd
Lac11g1572 Lac-Chr11:27336246 Lac4g0659 Lac-Chr4:16195597 4.20E-10 wgd
Lac11g1572 Lac-Chr11:27336246 Lac4g0860 Lac-Chr4:21637217 3.50E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85756 PF00069 Pkinase 2.10E-55 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac11g1572 K08789 - csv:101210442 1691.78